Giter Club home page Giter Club logo

ds000254's Introduction

This dataset contains resting state data collected using a multiband, multiecho simultaneous pseudocontinous ASL (pCASL) and BOLD acquisition. Additional information regarding the sequence is as follows:

The sequence consists of an unbalanced pseudo-continuous ASL (pCASL) tagging module, followed by a post labeling delay period (PLD). Following the PLD, a multiband excitation and multi-echo, gradient-echo EPI readout was implemented. Blipped-CAIPI was also applied to reduce g-factor noise amplification caused by the slice-unaliasing in MB imaging. Each echo in the multi-echo acquisition was obtained consecutively as part of one shot. The last repetition is the M0 image collected for quantification of CBF.
Each subject underwent one bilateral finger tapping task MBME ASL/BOLD scan, which utilized an unbalanced pCASL labeling scheme with labeling time=1.5 s and PLD=1.5 s. A partial k-space acquisition was employed with 20 overscan lines. To keep the later TEs within reasonable ranges and reduce total readout time, in-plane acceleration was employed with R=2. Additional parameters for the MBME ASL/BOLD run were as follows: number of echoes=4, TE=9.1, 25, 39.6, 54.3 ms, TR=3.5 s, MB-factor=4, number of excitations=11 (total slices=11×4=44), FOV=240 mm, resolution=3×3×3 mm, FA=90°, RF pulse width=6400 ms. Scans lasted 356s, which included 64s of calibration reps at the beginning of the scan. In total 73 repetitions were acquired.

### Comments added by Openfmri Curators ###
===========================================

General Comments
----------------
T2 data wasn’t used for any of the analysis in the paper though they were acquired as per the paper.

Defacing
--------
Pydeface was used on all anatomical images to ensure de-identification of subjects. The code
can be found at https://github.com/poldracklab/pydeface

Quality Control
---------------
MRIQC was run on the dataset. Results are located in derivatives/mriqc. Learn more about it here: https://mriqc.readthedocs.io/en/stable/

Where to discuss the dataset
----------------------------
1) www.openfmri.org/dataset/ds******/ See the comments section at the bottom of the dataset
page.
2) www.neurostars.org Please tag any discussion topics with the tags openfmri and dsXXXXXX.
3) Send an email to [email protected]. Please include the accession number in
your email.

Known Issues
------------

ds000254's People

Contributors

franklin-feingold avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.