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enrichcm

enrich cell markers

enrichr

A hacky little interface to call the Enrichr functional enrichment tool from R.

epidish

This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.

eurobioc2024

fastpca

FastPCA using PRIMME

gds-processor

Process GDS files from Gene Expression Omnibus (GEO)

genome_runner

genome_runner_galaxy

genomerunner

Automating genome exploration

genomerunner_database

Epigenomic data for potential use in GenomeRunner

genomerunner_web

Web version of GenomeRunner

genomerunnermisc

GenomeRunner Miscellaneous functions

genomerunnertc

GenomeRunner Table Creator

genomicdistributions

Calculate and plot distributions of genomic ranges across the genome

github_metrics

gograph

Utility for finding shortest paths in Gene Ontology. .NET

grant_template

Template for organizing grant-related material in R Markdown

grants_notes

Notes on potential funding opportunities

grdocs

GenomeRunner documentation

gtex

Playground with GTEx data

gwas2bed

Extracting disease-specific genomic coordinates from GWAS catalog

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_data

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

hic_tools

A collection of tools for Hi-C data analysis

hiccompareworkshop

Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76

hmp2

16S rRNA sequencing data for the HMP2 project

hw1

test repo

immuno_notes

Immunology-related bioinformatics data and tools

intropolis

Exon-exon splice junctions across SRA

intror

Intro to R workshop for UVa Library StatLab