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athena

A GUI for automated sequence design of wireframe scaffolded DNA origami

bscor

Beam Scaffolded Origami Routing

cadnano2

PyQt5 port of cadnano2

cadnano2.5

PyQt5 version of cadnano

daedalus2-pub

dotfiles

Config files.

fem-class

Python scripts and lecture notes of the graduate course <Finite Element Method> delivered by Minh-Chien Trinh, Division of Mechanical System Engineering, @JBNU, South Korea

geompy

A Python package for practical geometry algorithms.

hello-world

To use GitHub for the first time!

magicdna

DNA origami design tool

mctrinh

metis

Mechanically Enhanced and Three-layered orIgami Structure

neural-networks-from-scratch

The Jupyter Notebook adaption of “Neural Networks from Scratch in Python” by Harrison and Daniel, crafted for utilization as teaching resources in the graduate course titled “Deep Learning”, offered during the Spring 2024 semester at Jeonbuk National University, by Minh-Chien Trinh.

nupack

NUPACK is a growing software suite for the analysis and design of nucleic acid structures, devices, and systems.

off-lattice-cando

Off-lattice finite element solver for DNA nanostructures.

perdix

Programmed Eulerian Routing for DNA Design using X-overs

py-calculator

Build a Python calculator using Tkinter.

pydaedalus

This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami

scaffold-routing-rectification

Rectification of a calculated scaffold routing using NVIDIA PhysX

tacoxdna

A collection of tools for DNA modelling

talos

Three-dimensional, Algorithmically-generated Library of DNA Origami Shapes

vhelix

An Autodesk Maya plugin for modelling DNA based structures

viennarna

The ViennaRNA Package