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Welcome to the Google Genomics GitHub Organization!

• Watch a video
• Try a few BigQuery queries upon public genomic data.

• getting-started-bigquery Example queries to show how to get started with genomic data in BigQuery.

• codelabs Codelabs demonstrating usage of several tools and systems upon genomic data.

• bigquery-examples Advanced BigQuery examples upon genomic data.

• api-client-java A command line tool for Google Genomics API queries.

• api-client-r An R package for Google Genomics API queries.

• gatk-tools-java Tools for using Picard and GATK with the Google Genomics API.

• dataflow-java Google Cloud Dataflow pipelines upon genomic data such as Identity-By-State.

• spark-examples Apache Spark jobs on genomic data such as Principal Coordinate Analysis.

• mapreduce-python Google App Engine Python MapReduce job which calculates Read coverage.

• getting-started Examples of how to get started with the Google Genomics API in many languages.

• api-provider-local-java An implementation of the Global Alliance Reads API which reads data from local BAM files.

• api-client-javascript A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.

• api-client-android A sample Android app that calls the Google Genomics API.

• api-client-python Google AppEngine implelmentation of a simple genome browser that pulls data from the Google Genomics API.

• api-client-r An R package for Google Genomics API queries.

• See the Shiny example.

• See the ggbio example.

• denovo-variant-caller-java A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.

• gce-images Scripts that create a Google Compute Engine image containing a set of popular genomics software.

• utils-java Common Java files for Google Genomics integrations.

• See the README in each GitHub repository.
• http://cloud.google.com/genomics
• http://google-genomics.readthedocs.org