Name: Michael Hall
Type: User
Company: University of Melbourne | Doherty Institute
Bio: Postdoc @ University of Melbourne with @lachlancoin. Bioinformatics | TB | Nanopore | Microbial Genomics | Software Dev.
Location: Sunshine Coast, Australia
Blog: https://mbh.sh
predoc-lunch-sem-20200311
Slides for presentation at the EBI predoc lunch seminar 11/03/2020
predocday-20200331
Slides for my presentation at EBI Predoc Day 2020
predocday-20210304
Slides for my presentation at the EMBL-EBI Predoc Day on 04/03/2021
psdm
Compute a pairwise SNP distance matrix from one or two alignment(s)
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
qmrl-slides
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
rasusa
Randomly subsample sequencing reads
reveal-hugo-ebi
An EBI-themed reveal.js presentation template powered by reveal-hugo
reveal-hugo-nord
A nord-themed reveal-hugo presentation template
reveal_presentations
Repository to host all my reveal.js presentations
rootstock
Clone me to create your Manubot manuscript
rust
Empowering everyone to build reliable and efficient software.
seequence
Visualisation tool for sequence alignment
sepsis-methylation
Pipeline to analyse the dRNA methylation of sepsis samples.
skc
Shared k-mer content between two genomes
slurm
Cookiecutter for snakemake slurm profile
snakefmt
The uncompromising Snakemake code formatter
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
ssubmit
Submit slurm sbatch jobs without the need to create a script
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
statannotations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
streamformatics
Real-time species-typing visualisation for nanopore data.
syri
Synteny and Rearrangement Identifier
tac2-presentation
Slides for the presentation of my second-year report to my thesis advisory committee
tac3_presentation
Slides accompanying the presentation for my third-year thesis advisory committee meeting
tac3_report
Third-year report for my EMBL-EBI Thesis Advisory Committee (TAC)
taeper
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
taiyaki
Training models for basecalling Oxford Nanopore reads
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
