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bigdata_amazon_reviews_etl_cloud

Performing cloud-base ETL and analyzing data using SQL, Natural Language Processing (NLP) pipeline and Machine Learning model.

cns_bindingprediction

Using conserved non-coding sequences for robust transcription factor binding prediction

fargate-mlflow-server

CDK deployment of MLflow on AWS Fargate to use with Amazon SageMaker.

grace

Enhancing gene regulatory network inference through data integration with markov random fields

haschseq

intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

lucid

A collection of infrastructure and tools for research in neural network interpretability.

metacluster

R package for context-specific functionality analysis of metabolic gene clusters

mip3

networkmoduledetection

Highly scalable network clustering based on recursive jaccard similarity graph sparsification

picturesensation

Auditory image understanding for the visually impaired

plant-root-growth-regulation

probabilisticmetabolicgeneclusterhighconfidencesetinference

Probabilistic metabolic gene cluster high confidence set inference

python_data_analysis

Python data repo, jupyter notebook, python scripts and data.

sequence-to-expression-inference

This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'

sharp

SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection

supervision

Python implementation of Who supervises the supervisor? Model monitoring in production using deep feature embeddings with applications to workpiece inspection (https://arxiv.org/abs/2201.06599) to be presented at the 8th International Conference on Machine Vision and Machine Learning (MVML'22) (https://mvml.org)

supervision-aws

xpresso

Predicting gene expression levels from genomic sequences