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scdrugprio

Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease

schob

schuman_organoids_covid19

scinet

scissor

Scissor package

scmetabolism

Quantifying metabolism activity at the single-cell resolution

scpagwas_main

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

scpagwas_reproduce

reproduce scPagwas code

scrna-seq_online

sctpa

A tool for single-cell transcriptome analysis of pathway activation signatures

scvelo

RNA Velocity generalized through dynamical modeling

scz_smoking_project

selene

a framework for training sequence-level deep learning networks

sigrac

single_cell_genetics

singlelivercells

Scripts for processing single liver cells RNA-Seq 10X Genomics Data

sklearn_for_machine_learning

snatac_in_house_pipeline

snpsea

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

sqanti

sqanti3

Tool for the Quality Control of Long-Read Defined Transcriptomes

star_protocols_core_modules

Code accompanying STAR protocols publication describing the identification of core modules in a co-expression network using GWAS data

steap

Single cell Type Enrichment Analysis for Phenotypes (STEAP)

subdyquency

data and code for Subdyquency

symsim

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

tb

testsctpa

A portable toolkit for pathway activity score calculation

ttest_trastuzumab_expression

twosamplemr

R package for performing 2-sample MR using MR-Base database