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Comments (4)

sunta3iouxos avatar sunta3iouxos commented on September 3, 2024 1

interestingly it is

null

here is the whole file:

clusterConfig: shared/cluster.yaml
condaEnvDir: null
configMode: manual
emailSender: null
max_thread: 25
oldConfig: null
onlySSL: false
organismsDir: shared/organisms
smtpPassword: null
smtpPort: 0
smtpServer: null
smtpUsername: null
snakemakeOptions: ''
tempDir: /scratch/tgeorgom/tmp/
toolsVersion: true

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WardDeb avatar WardDeb commented on September 3, 2024 1

Was it set before ? If not, fill in an appropriate path (without a trailing slash), and you should be able to continue then.

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sunta3iouxos avatar sunta3iouxos commented on September 3, 2024 1

done and close
Thank you

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WardDeb avatar WardDeb commented on September 3, 2024

What is the condaEnvDir variable set to in your 'defaults.yaml' file ? (snakePipes info to get the path to it).

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