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Comments (3)

WardDeb avatar WardDeb commented on July 29, 2024 1

How exactly did you install the requirements ? This seems a mismatch between snakemake & pulp versions

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sunta3iouxos avatar sunta3iouxos commented on July 29, 2024 1

How exactly did you install the requirements ? This seems a mismatch between snakemake & pulp versions

This is related to:
snakemake/snakemake#2606

I fixed it by doing:

pip install --upgrade pulp==2.7.0

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sunta3iouxos avatar sunta3iouxos commented on July 29, 2024

This is what I did

mamba create -n snakepipes_devel python=3.11 pip
#1710858972
mamba activate snakepipes_devel
#1710858983
pip install --upgrade .
#1710859427
snakePipes config --condaEnvDir /scratch/tgeorgom/mamba/snakepipes_devel/envs/
#1710859440
snakePipes createEnvs

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