martinkim0 Goto Github PK

biocyc-extractor

Extracts chemicals and reactions from Biocyc database files.

bioe145

Course notebooks for BIOE 145, Machine Learning for Computational Biology

cansig

Discovering de novo shared transcriptional programs in single cancer cells

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

cellxgene-census

CZ CELLxGENE Discover Census

cs182_hw1_student

cs182_hw2_student

cs182_hw3_student

distill-template

This is the repository for the distill web framework

ecosystem-ci

Automate issue discovery for your projects against Lightning nightly and releases.

fetal-brain-immune

fsdl-labs-2022

Complete deep learning project developed in Full Stack Deep Learning, 2022 edition. Generated automatically from https://github.com/full-stack-deep-learning/fsdl-text-recognizer-2022

globaldistancetest

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

martinkim0

Config files for my GitHub profile.

mrvi

Multi-resolution Variational Inference

mudata

Multimodal Data (.h5mu) implementation for Python

openproblems-v2

Formalizing and benchmarking open problems in single-cell genomics

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scgen

Single cell perturbation prediction

scib

Benchmarking analysis of data integration tools

scvelo

RNA Velocity generalized through dynamical modeling

scvi-tools

Deep probabilistic analysis of single-cell omics data

scvi-tools-feedstock

A conda-smithy repository for scvi-tools.

scvi-tools-site