martinjzhang / adafdr Goto Github PK

Hi @martinjzhang,

Trying to get AdaFDR installed, I'm getting the following error:

Could not find a version that satisfies the requirement torch==0.3.1 (from versions: 0.1.2, 0.1.2.post1, 0.4.1, 0.4.1.post2, 1.0.0) 
No matching distribution found for torch==0.3.1

Any idea?

Thanks in advance!

Hi there,

I apologize, this might be a beginner problem. But I couldn't figure out why. Could you help me see it? Thanks!

xbsp.shape #(17113, 524) pbsp.shape #(17113, 1)

I was trying to use a (17113, 524) array as x, I tried both "covariate_type=None" and "covariate_type=np.zeros([524], dtype=bool)" but I have this error:

res = md.adafdr_test(pbsp, xbsp, alpha=0.1, covariate_type=covariate_type)

multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/python3.6/multiprocessing/pool.py", line 119, in worker
result = (True, func(*args, **kwds))
File "/python3.6/multiprocessing/pool.py", line 44, in mapstar
return list(map(*args))
File "/python3.6/site-packages/adafdr/method.py", line 364, in method_single_fold_wrapper
f_write=f_write, fast_mode=fast_mode)
File "/python3.6/site-packages/adafdr/method.py", line 605, in method_single_fold
f_write=f_write)
File "/python3.6/site-packages/adafdr/method.py", line 945, in method_init
x_null,x_alt = x[p>0.75],x[p<0.05]
IndexError: boolean index did not match indexed array along dimension 1; dimension is 524 but corresponding boolean dimension is 1
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "", line 1, in
File "/python3.6/site-packages/adafdr/method.py", line 502, in adafdr_test
res = po.map(method_single_fold_wrapper, Y_input)
File "/python3.6/multiprocessing/pool.py", line 266, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/python3.6/multiprocessing/pool.py", line 644, in get
raise self._value
IndexError: boolean index did not match indexed array along dimension 1; dimension is 524 but corresponding boolean dimension is 1