Comments (3)
From [email protected] on November 07, 2014 08:01:56
Yes this behaviour could very usefull. I have tons of examples were my MID has been "eaten" at the beginning of the read. Combining -e and -O allows substitutions and that's too permissive.
And by the way, thanks for the trick.
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From [email protected] on November 10, 2014 05:35:23
Thanks for the feedback! I’ll try to come up with a way of allowing this. It may take a while, howere (although I’m aware that this report is already two years old).
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This can be achieved with -g XXXXADAPTER
. The X
characters are interpreted as IUPAC wildcards that do not match any nucleotide. If the number of X
is lower than the number of allowed errors, the match will never be found within the read.
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