Comments (3)
From [email protected] on August 24, 2011 07:08:54
Hi, thanks for the report and sorry for the late reply (due to vacation).
It seems you've stumbled upon an error that I have fixed in the most recent cutadapt version (without putting a note about this in the changelog, sorry).
Please either upgrade to cutadapt 0.9.5 or fix the problem by changing within your file /home/weronika/programs/work_software/cutadapt-0.9.4-py2.6-linux-x86_64.egg/cutadapt/xopen.py the line
return sys.stdout if 'r' in mode else sys.stdin
to
return sys.stdin if 'r' in mode else sys.stdout
Regards,
Marcel
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From [email protected] on August 25, 2011 17:57:29
Thanks for the very helpful answer! I made the line change, it works now.
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From [email protected] on October 07, 2011 05:36:25
Status: Fixed
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Related Issues (20)
- Remove the "Incomplete adapter sequence" warning
- Nanopore adapter detection HOT 1
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- Unexpected trimming behavior HOT 5
- cutadapt: error: cutadapt not able to trim the desired adapto HOT 3
- Error in FASTQ file at line 20136: Length of sequence and qualities differ HOT 2
- Adapter matches in the middle of a read masked with N HOT 2
- Feature request: shorten paired-end reads with separate values for --length HOT 1
- Help to get accurate counts of demultiplexed amplicons using cutadapt HOT 2
- Adapters in form of file and linked mode HOT 4
- Problems reading stdin on Windows 11 Python 3.12 HOT 5
- Heterogeneity Spacers and Primers HOT 2
- Using --revcomb on paired-end data HOT 1
- Issue importing fasta files to Cutadapt virtual environment HOT 1
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- Primer sequence trimming. Cutadapt does not cut all of them HOT 1
- Should I use -a or -g when demultiplexing ONT reads with dual barcodes? HOT 3
- Unable to trim primers from my interleaved fastq files HOT 4
- cutadapt not recognizing second input file HOT 1
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