make Ns align to any base about cutadapt HOT 5 CLOSED

From [email protected] on June 14, 2011 00:02:40

Hi, thanks for your comment. I think your idea makes sense. I'm not sure when I'll get around to implementing it, however.

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From [email protected] on October 01, 2011 12:39:14

I have attached a patch that allows both Ns in the read and in the adapter. It can optionally report those that match 'N's in the adapter as well, as per http://nar.oxfordjournals.org/content/early/2011/04/13/nar.gkr217.abstract

Attachment: issue-23.patch

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From [email protected] on October 14, 2011 05:13:35

I have updated the patch to r201 . Changed references to degenerate to wildcard and added tests.

Provided the diff as well (does git formatted patch apply ok?).

Attachment: wildcard_patch_r201.diff wildcard_patch_r201.patch

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From [email protected] on October 14, 2011 07:35:31

Thanks a lot, this works now (committed as revision 202 ). To those watching this bug: Use the new --match-read-wildcards parameter to make the above test case work.

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From [email protected] on October 14, 2011 07:36:25

Status: Fixed

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