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fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

functional_network_development

Code for "Conservative and disruptive modes of adolescent change in human brain functional connectivity"

ggseg

Plotting tool for brain atlases, in ggplot

ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

google-cloud-associate-cloud-engineer

Course files for Google Cloud Associate Cloud Engineer - Antoni Tzavelas

hansen_genescognition

Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".

hansen_many_networks

hansen_receptors

Data and code supporting Hansen et al., 2021 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

hitchhackers_guide_brain

A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

how-to-build-a-machine-learning-model

Code for Chapter 19 - A Step-By-Step Tutorial On How To Build A Machine Learning Model

introml-sklearn-nilearn

Files required to follow along the introduction session to machine learning with sklearn and nilearn

introtodeeplearning

Lab Materials for MIT 6.S191: Introduction to Deep Learning

large-language-models

lectures

Oxford Deep NLP 2017 course

longcombat

R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data

maps_and_parcs

Parcellations and brain maps

maybrain

Python package for analysing and visualising brain connectome data

meta-analysis_pdp

Scripts from a multi-level meta-analysis on the cognitive profile of PDP vs PD patients

monai

AI Toolkit for Healthcare Imaging

morphometric_similarity_sz

Morphometric similarity in psychosis- data and code

mrai_workshop

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

muxviz

Analysis and Visualization of Interconnected Multilayer Networks

mypls

myPLS toolbox - PLS analysis for medical image processing

nctpy

A toolbox for implementing Network Control Theory analyses in python

nest

Nest Pelican Template

neuro-vis-brainhack-2021

neuroharmony

A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)

neuroimaging_pattern_masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.

neuromaps

A toolbox for comparing brain maps