mamanambiya Goto Github PK

r_scripts

repo to track changes made to my r scripts

refimpute_panels

Nextflow pipelines for building H3A refpanels

rmakrdown

samtools-head-nf

example nextflow workflow that runs samtools head with samtools version 1.15

sandwicheswithsnakemake

This is a beginner's tutorial to Snakemake

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data

sdg-data

sdg-site

simplesnakemaketutorial

singularity_testing

slicknav

Responsive Mobile Menu Plugin for jQuery

snakemake-trimmomatic

Example of a snakemake encapsulation of trimmomatic

snakemake-uppmax-demo

Demonstrates the use of snakemake compared to GNU make on Uppmax with a simple example

snakemake-workflows

Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.

specification-v2-default-schemas

Schemas to be used as default by Beacon v2.0

svg-crowbar

Extracts an SVG node and accompanying styles from an HTML document and allows you to download it all as an SVG file.

tasc

Technical Alignment Sub Committee

templates-six

WHMCS Six Client Area Template Theme

terminal-mac-cheatsheet

List of my most used commands and shortcuts in the terminal for Mac

test_data_imputation

Test data for chipimputation pipeline

tofu

Tofu is a Python tool for generating synthetic UK Biobank data.

twitterchive

Archive and analyze results from a Twitter search

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

varcall

Nextflow scripts for doing variant calling on human samples

vcfreport

Produces stats on a vcf panel

viral-ngs

Viral genomics analysis pipelines

vp

Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take variants data (VCF format), microarray SNP genotyping data and high-throughput sequencing data as input, and report to the users how the variants in their personal genomes impact their drug response, including drug efficacy, dosage and toxicity.

wagtailcmsdemo

Wagtail CMS Demo

website

The code behind okfn.org

wp1-agm_beacon

Insert WP3 pseudodata into beacon-2.x