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An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPed also computes a variety of relatedness coefficients and offers verbal descriptions of pairwise relationships.

Home Page: https://magnusdv.shinyapps.io/quickped

License: GNU General Public License v3.0

R 97.54% HTML 0.92% CSS 1.54%
pedigree pedigree-analysis relatedness medical-genetics forensic-genetics

quickped's People

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magnusdv avatar stephenturner avatar

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quickped's Issues

Thore testing

  • Startposisjon.
    Prøver å gjøre 1 og 2 til MZ tvillinger.
    Får feilmelding, OK, men alt fjernes,
    Samme hvis man prøver å lage 1 og 3 til DZ tvillinger.
    Hvis man prøver å lage 1 og 2 til tvillinger, skjer ingen ting.
    For få opp Trio igjen, velger jeg først et annet
    pedigre og så trio.

  • Jeg er usikker på hva den røde knappen
    'Reset all' gjør, ingen påvirkning på
    feks 'Width', men på 'Labels' (OK).

  • Nevne i dokumentasjon at 'deceased' og tvillinginfo
    ikke lagres i ped-filen?!

  • Jeg skjønner ikke hvordan man leser inn med readPed
    dersom det er en aff kolonne.
    Skru av Affection status default?
    Jeg klarer ikke å lese inn i QuickPed dersom det er en 'aff' kolonne.

header of exported .ped file missing #

Not sure if it is intended, the exported .ped is missing the # in the header.

famid id fid mid sex aff
1 1 0 0 1 1
1 2 0 0 2 1
1 3 1 2 1 1

instead of

#famid id fid mid sex aff
1 1 0 0 1 1
1 2 0 0 2 1
1 3 1 2 1 1

Space tolerated in id labels

Great app! It's possible to produce a ped file like
image
which fortunately leads to

readPed("quickped.ped")
Error: Duplicated entry in id vector: 1, 1

Problem reading export from quickped

Very nice extensions! Great fun with the Habsburgs, verbalisr,, Jacquard, ...
I was unable to read the Habsburg ped fil into R with readPed. However, if I change labels to 1,2,...
before Save ped file, the problem goes away.

Disconnected from server when adding new individuals to complex pedigree

Hello!

This is such a fantastic tool and I am so grateful to be using it.

I am hoping to create a pedigree that involves ~300 individuals, with various degrees of inbreeding. After ~120 entries, whenever I enter a new individual and try to update their ID name, the program quits out with the attached error. "Disconnected from the server"

Screen Shot 2023-06-02 at 5 04 06 PM

Any help would be much appreciate!

Thanks so much

Removing individuals

I am not allowed to remove individuals 201, 202 and 203 in the pedigree below:
image

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