ma-compbio / phylo-hmgp Goto Github PK

I am not able to specify a custom root path using the "--root_path" option. Each time I try using it, I get the following error message:
there is no such file input_example/sig.feature.1.txt

I looked at the phylo_hmgp.py script and line 1445 shows the following:
filename1 = "input_example/sig.feature.1.txt"

I see similar code for inputting the other data files.

Does this mean that the script is hardcoded to read in the example data files? If so, can this be changed to allow the user to input his/her own data files?

Thank you

When I submit the final script of the script, there is a computational overflow problem.

I don't have NA in my data.
How do I modify and successfully run the script to produce the final result?
Thank you.