This repository contains the code used in our single cell sequencing paper: "Lupus susceptibility loci predispose mice to clonal lymphocytic responses and myeloid expansion"
https://pubmed.ncbi.nlm.nih.gov/35477687/
- Download
data
andcode
directories - Set
data
as the working directory - Download
gex
andvdj
data from GSE192762 todata
, available here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192762 - Run each script in numerical order in either Rstudio or Python. These scripts will generate the figures presented in our manuscript.
NB: Expected total run time is 3 weeks