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Baseline inference Algorithm for the STOIC2021 challenge.

License: MIT License

Dockerfile 3.85% Python 84.74% Batchfile 4.88% Shell 6.53%

stoic2021-baseline's People

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oliviergimenez choidm chinmayrane55 joojinho97 hq-deng alwynwu gamanakis randanp skim2257 podismine nnassime imenus241 hanrthu maszim

stoic2021-baseline's Issues

running test.sh

Hi Luuk,

I'm trying to run the baseline example, but it doesn't seem to be completing successfully... The docker build process completes fine, but when running sudo ./test.sh I get the following error:

...
build debug logs here
...
Successfully built 45e1fdb80f76
Successfully tagged stoicalgorithm:latest
stoicalgorithm-output
WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
Could not load 1.0.000.000000.0.00.0.0000000000.0000.0000000000.000.zraw using <evalutils.io.SimpleITKLoader object at 0x7fd003f33a90>.
0.5522074103355408
0.5823957324028015
Expected output was not found...
stoicalgorithm-output
farrell@skylab:~/stoic2021-baseline$

Thanks!

data input/output

Hello,

When running process.py with multiple images in test/images/ct, I also get the following error:

RuntimeError: Multiple case prediction not supported with single-value output interfaces.

I'm not familiar with the evalutils library, do you know whats going wrong here?

Thanks!

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