lukasfischer83 / tof-tracer2 Goto Github PK
View Code? Open in Web Editor NEWAnalyze Time Of Flight Mass Spec raw data in Tofwerk HDF5 format, New version for Julia >= 1.1
License: MIT License
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Add how to precompile into readme
in my case i loaded the program with vsc github and everything was downloaded.
but then I failded to precompile everything
So just state: before first time running:
run in julia
using Pkg
Pkg.precompile()
if this is not working (as was the case with me) run Pkg.update()
Pkg.activate .
Or another way round (I donot really know the details)
PyError after precompiling when running processingproject
julia> include("$(pwd())\src\processingProjects\processingProject-CLOUD15.jl")
[ Info: Installing matplotlib via the Conda matplotlib package...
[ Info: Running conda install -y matplotlib in root environment
Channels:
- defaults
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): done
Solving environment: done
Package Plan
environment location: C:\Users\Umwelt.julia\conda\3\x86_64
added / updated specs:
- matplotlib
The following packages will be downloaded:
package | build
---------------------------|-----------------
brotli-1.0.9 | ha925a31_2 332 KB
contourpy-1.2.0 | py310h59b6b97_0 203 KB
cycler-0.11.0 | pyhd3eb1b0_0 12 KB
fonttools-4.25.0 | pyhd3eb1b0_0 632 KB
freetype-2.12.1 | ha860e81_0 490 KB
giflib-5.2.1 | h8cc25b3_3 88 KB
glib-2.69.1 | h5dc1a3c_2 1.8 MB
gst-plugins-base-1.18.5 | h9e645db_0 1.7 MB
gstreamer-1.18.5 | hd78058f_0 1.7 MB
icu-58.2 | ha925a31_3 9.4 MB
jpeg-9e | h2bbff1b_1 320 KB
kiwisolver-1.4.4 | py310hd77b12b_0 60 KB
lerc-3.0 | hd77b12b_0 120 KB
libclang-12.0.0 |default_h627e005_2 17.8 MB
libdeflate-1.17 | h2bbff1b_1 153 KB
libogg-1.3.5 | h2bbff1b_1 33 KB
libpng-1.6.39 | h8cc25b3_0 369 KB
libtiff-4.5.0 | h8a3f274_0 1.2 MB
libvorbis-1.3.7 | he774522_0 202 KB
libwebp-1.3.2 | hbc33d0d_0 73 KB
libwebp-base-1.3.2 | h2bbff1b_0 306 KB
matplotlib-3.8.0 | py310haa95532_0 9 KB
matplotlib-base-3.8.0 | py310h4ed8f06_0 6.8 MB
munkres-1.1.4 | py_0 13 KB
openjpeg-2.4.0 | h4fc8c34_0 219 KB
pcre-8.45 | hd77b12b_0 382 KB
pillow-10.0.1 | py310h045eedc_0 788 KB
ply-3.11 | py310haa95532_0 81 KB
pyparsing-3.0.9 | py310haa95532_0 154 KB
pyqt-5.15.10 | py310hd77b12b_0 4.1 MB
pyqt5-sip-12.13.0 | py310h2bbff1b_0 75 KB
python-dateutil-2.8.2 | pyhd3eb1b0_0 233 KB
qt-main-5.15.2 | he8e5bd7_7 50.0 MB
sip-6.7.12 | py310hd77b12b_0 521 KB
six-1.16.0 | pyhd3eb1b0_1 18 KB
sqlite-3.41.2 | h2bbff1b_0 894 KB
tomli-2.0.1 | py310haa95532_0 25 KB
tornado-6.3.3 | py310h2bbff1b_0 647 KB
zlib-1.2.13 | hcfcfb64_5 105 KB conda-forge
------------------------------------------------------------
Total: 101.7 MB
The following NEW packages will be INSTALLED:
brotli pkgs/main/win-64::brotli-1.0.9-ha925a31_2
contourpy pkgs/main/win-64::contourpy-1.2.0-py310h59b6b97_0
cycler pkgs/main/noarch::cycler-0.11.0-pyhd3eb1b0_0
fonttools pkgs/main/noarch::fonttools-4.25.0-pyhd3eb1b0_0
freetype pkgs/main/win-64::freetype-2.12.1-ha860e81_0
giflib pkgs/main/win-64::giflib-5.2.1-h8cc25b3_3
glib pkgs/main/win-64::glib-2.69.1-h5dc1a3c_2
gst-plugins-base pkgs/main/win-64::gst-plugins-base-1.18.5-h9e645db_0
gstreamer pkgs/main/win-64::gstreamer-1.18.5-hd78058f_0
icu pkgs/main/win-64::icu-58.2-ha925a31_3
jpeg pkgs/main/win-64::jpeg-9e-h2bbff1b_1
kiwisolver pkgs/main/win-64::kiwisolver-1.4.4-py310hd77b12b_0
lerc pkgs/main/win-64::lerc-3.0-hd77b12b_0
libclang pkgs/main/win-64::libclang-12.0.0-default_h627e005_2
libdeflate pkgs/main/win-64::libdeflate-1.17-h2bbff1b_1
libogg pkgs/main/win-64::libogg-1.3.5-h2bbff1b_1
libpng pkgs/main/win-64::libpng-1.6.39-h8cc25b3_0
libtiff pkgs/main/win-64::libtiff-4.5.0-h8a3f274_0
libvorbis pkgs/main/win-64::libvorbis-1.3.7-he774522_0
libwebp pkgs/main/win-64::libwebp-1.3.2-hbc33d0d_0
libwebp-base pkgs/main/win-64::libwebp-base-1.3.2-h2bbff1b_0
matplotlib pkgs/main/win-64::matplotlib-3.8.0-py310haa95532_0
matplotlib-base pkgs/main/win-64::matplotlib-base-3.8.0-py310h4ed8f06_0
munkres pkgs/main/noarch::munkres-1.1.4-py_0
openjpeg pkgs/main/win-64::openjpeg-2.4.0-h4fc8c34_0
pcre pkgs/main/win-64::pcre-8.45-hd77b12b_0
pillow pkgs/main/win-64::pillow-10.0.1-py310h045eedc_0
ply pkgs/main/win-64::ply-3.11-py310haa95532_0
pyparsing pkgs/main/win-64::pyparsing-3.0.9-py310haa95532_0
pyqt pkgs/main/win-64::pyqt-5.15.10-py310hd77b12b_0
pyqt5-sip pkgs/main/win-64::pyqt5-sip-12.13.0-py310h2bbff1b_0
python-dateutil pkgs/main/noarch::python-dateutil-2.8.2-pyhd3eb1b0_0
qt-main pkgs/main/win-64::qt-main-5.15.2-he8e5bd7_7
sip pkgs/main/win-64::sip-6.7.12-py310hd77b12b_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sqlite pkgs/main/win-64::sqlite-3.41.2-h2bbff1b_0
tomli pkgs/main/win-64::tomli-2.0.1-py310haa95532_0
tornado pkgs/main/win-64::tornado-6.3.3-py310h2bbff1b_0
zlib conda-forge/win-64::zlib-1.2.13-hcfcfb64_5
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package matplotlib could not be imported by pyimport. Usually this means
that you did not install matplotlib in the Python version being used by PyCall.
PyCall is currently configured to use the Julia-specific Python distribution
installed by the Conda.jl package. To install the matplotlib module, you can
use pyimport_conda("matplotlib", PKG), where PKG is the Anaconda
package that contains the module matplotlib, or alternatively you can use the
Conda package directly (via using Conda followed by Conda.add etcetera).
Alternatively, if you want to use a different Python distribution on your
system, such as a system-wide Python (as opposed to the Julia-specific Python),
you can re-configure PyCall with that Python. As explained in the PyCall
documentation, set ENV["PYTHON"] to the path/name of the python executable
you want to use, run Pkg.build("PyCall"), and re-launch Julia.
running
Pkg.build("PyCall") solves this issue
bug when running?
julia> include("$(pwd())\src\processingProjects\processingProject-CLOUD15.jl")
Trying to load masslist from csv file (F:\CLOUD 15\Masslists\masslist_PureIP.csv)!
Unidentified Peaks found in masslist F:\CLOUD 15\Masslists\masslist_PureIP.csv: 19.02984955 19.0393966 20.02227211 20.03621101 22.98873329 26.01504135 30.01058388 30.99495125 33.02140427 33.99472046 34.01749039 34.02879715 34.04182053 38.03507614 38.04924774 40.03922653 45.00925492 45.04586792 47.00146484 47.0131073 47.02429962 47.99792862 48.99302292 49.01643372 49.06416321 49.07601547 50.00082397 50.0141449 50.04764175 51.0324707 51.05566406 52.08749008 53.07162094 56.04459 56.05992508 57.01999664 58.0498496 60.05606442 61.04016495 63.98038483 64.00344086 64.01947784 65.02401733 65.03512695 66.01958221 69.0426712 72.06608356 75.94371796 77.06999835 78.04882346 81.05489805 83.07054165 87.09249605 93.01141357 94.11109161 95.03334288 96.02215576 99.99367523 101.1063919 105.1027109 107.0459061 109.1338577 111.0479333 111.101532 112.0590523 113.0435184 115.0047913 115.0894141 119.1178818 121.0311648 121.9775009 123.0507507 124.0346756 125.0094681 131.0474583 132.0395203 133.0165318 133.0481761 134.1527421 136.0196565 137.0913415 139.0921478 140.058406 141.0627424 141.0900951 143.0223236 143.043045 143.116333 143.1528168 143.9324036 145.016098 145.0554021 145.1211872 145.1391915 147.0387808 147.0760175 151.0304747 153.9875793 155.9843292 156.0321198 157.0589752 157.0877917 157.1242846 157.162657 159.0389252 160.9582825 161.053833 163.0496674 163.1165161 167.1044763 167.1395557 167.1616218 168.0410919 168.0641916 168.1127369 168.1368399 168.9898682 169.0440492 170.9431 171.1469242 171.170856 171.1850128 171.9621277 173.0790991 173.0927744 173.1396332 174.9863739 175.0517578 179.1479797 180.1336511 181.0393982 181.1283875 182.0115051 182.0395886 183.0980939 184.9452057 187.9590149 191.8328705 193.828949 222.9906616 223.164566 223.1838837 231.0381317 231.1492984 231.9832153 232.1144747 232.1607666 232.2212524 232.2686733 237.1742706 237.1986237 239.0956421 239.1599274 239.1891937 240.0899658 241.0741882 241.2096405 242.0757599 242.1083679 242.2085419 243.0588226 245.1096649 249.214859 251.1000977 251.1977844 253.0970764 254.1429901 254.1689606 255.0824432 255.7758636 256.7747803 257.7699585 258.116272 258.7717285 259.7687988 261.9951477 264.2043457 264.2272034 267.0006714 267.2480774 267.9969788 272.255127 276.1833496 276.2835693 277.0768127 278.2220764 281.2788086 282.1992188 283.1519165 283.2297363 283.2610779 284.2183533 285.2357483 286.1712341 286.1987305 286.232605 288.1920166 289.1762085 290.2381897 291.2345581 291.2624207 292.1868591 292.2728577 293.0993042 293.1337585 293.2008972 293.2528687 295.1603699 297.1753845 298.0812683 298.1363831 298.169281 299.0647888 301.173645 301.2099609 301.2667542 302.2304688 303.1557617 304.2782898 305.2520447 305.986969 306.9747314 307.1485596 308.131958 308.1789856 308.2195129 309.1235046 309.1643066 309.2034607 312.1354675 313.1186218 313.1988525 313.3041077 314.1876831 314.2272644 315.0982056 315.2287598 316.1720276 316.2073669 316.2807922 317.1695557 317.2081909 318.2973938 319.1850586 320.1885986 320.2465515 321.1635742 323.1431885 323.1771851 325.2103577 327.2277832 328.3110046 332.1747437 332.1981201 333.1665649 333.1975708 335.1812744 337.1605835 338.1557007 338.2294006 338.3392944 342.3692017 344.0343933 346.1888733 347.1820679 347.288147 348.0289612 353.1565247 354.368927 355.1091919 355.1845398 355.3700256 361.1975708 368.305542 368.3868713 370.2503357 370.3977661 374.0740967 144 files found, checking if valid.
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-09h38m42s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-09h43m47s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-09h48m52s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-09h53m56s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-09h59m01s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h04m06s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h09m11s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h14m15s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h19m20s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h24m25s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h29m30s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h34m35s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h39m40s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h44m44s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h49m49s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h54m54s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-10h59m59s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h05m03s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h10m08s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h15m13s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h20m18s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h25m23s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h30m28s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h35m33s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h40m38s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h45m42s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h50m47s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-11h55m52s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h00m57s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h06m02s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h11m07s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h16m11s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h21m16s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h26m21s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h31m26s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h36m31s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h41m35s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h46m40s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h51m45s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-12h56m50s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h01m55s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h07m00s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h12m05s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h17m09s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h22m14s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h27m19s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h32m23s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h37m28s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h42m33s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h47m38s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h52m43s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-13h57m48s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h02m53s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h07m57s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h13m02s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h18m07s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h23m12s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h28m16s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h33m21s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h38m26s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h43m31s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h48m36s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h53m41s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-14h58m46s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h03m51s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h08m56s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h14m01s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h19m06s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h24m10s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h29m15s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h34m21s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h39m25s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h44m30s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h49m35s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h54m40s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-15h59m45s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h04m50s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h09m54s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h14m59s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h20m04s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h25m09s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h30m13s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h35m18s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h40m23s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h45m28s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h50m32s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-16h55m37s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h00m42s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h05m47s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h10m51s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h15m56s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h21m01s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h26m05s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h31m10s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h36m15s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h41m20s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h46m25s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h51m30s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-17h56m35s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h01m40s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h06m45s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h11m50s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h16m55s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h22m00s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h27m05s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h32m09s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h37m14s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h42m18s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h47m23s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h52m28s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-18h57m33s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h02m37s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h07m42s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h12m47s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h17m52s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h22m56s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h28m01s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h33m06s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h38m11s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h43m16s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h48m21s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h53m27s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-19h58m31s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h03m36s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h08m41s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h13m46s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h18m51s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h23m56s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h29m00s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h34m05s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h39m10s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h44m15s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h49m20s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h54m25s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-20h59m30s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h04m35s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h09m40s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h14m45s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h19m49s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h24m55s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h29m59s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h35m04s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h40m09s_NH4.h5 ... OK
Checking F:\CLOUD 15\data_curretly_used\2022-11-25-21h45m14s_NH4.h5 ... OK
0 files removed.
Finished validation of HDF5 Files.
File order seems fine, continuing...
Read from File:
Writes: Float32[60.0], Bufs: Float32[5.0], WaveForms: Float32[18190.0], TofPeriod: Float32[54990.0], Segments: Float32[1.0], Blocks: Float32[1.0], SampleInterval: [0.2000000026702864], SIS: Float32[1.44]
Calculated:
Avg Spec Multiplier = [0.00046283886194555207]
Avg Spec Inttime = [300.080431104]
Setting mass scale reference spectrum.
calibRegions: [59 391]
Recalculating mass axis
Calculating Stick CPS for 1017 masses.
Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x7fff4a55c595 -- PyObject_Call at C:\Users\Umwelt.julia\conda\3\x86_64\python310.dll (unknown line)
in expression starting at C:\Users\Umwelt\Programs\TOF-Tracer2\src\processingProjects\processingProject-CLOUD15.jl:26
PyObject_Call at C:\Users\Umwelt.julia\conda\3\x86_64\python310.dll (unknown line)
macro expansion at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\exception.jl:108 [inlined]
#107 at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:43 [inlined]
disable_sigint at .\c.jl:473 [inlined]
__pycall! at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:42 [inlined]
_pycall! at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:29
_pycall! at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:11 [inlined]
#pycall#113 at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:83 [inlined]
pycall at C:\Users\Umwelt.julia\packages\PyCall\1gn3u\src\pyfncall.jl:83 [inlined]
#figure#7 at C:\Users\Umwelt.julia\packages\PyPlot\2MlrT\src\PyPlot.jl:164 [inlined]
figure at C:\Users\Umwelt.julia\packages\PyPlot\2MlrT\src\PyPlot.jl:162 [inlined]
#correctMassScaleAndExtractSumSpec#1 at C:\Users\Umwelt\Programs\TOF-Tracer2\src\workflows\combinedMassScaleAndExtractSumSpec.jl:134
correctMassScaleAndExtractSumSpec at C:\Users\Umwelt\Programs\TOF-Tracer2\src\workflows\combinedMassScaleAndExtractSumSpec.jl:11
unknown function (ip: 000001b48cd8367c)
jl_apply at C:/workdir/src\julia.h:1982 [inlined]
do_call at C:/workdir/src\interpreter.c:126
eval_value at C:/workdir/src\interpreter.c:223
eval_stmt_value at C:/workdir/src\interpreter.c:174 [inlined]
eval_body at C:/workdir/src\interpreter.c:635
jl_interpret_toplevel_thunk at C:/workdir/src\interpreter.c:775
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:934
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:877
ijl_toplevel_eval at C:/workdir/src\toplevel.c:943 [inlined]
ijl_toplevel_eval_in at C:/workdir/src\toplevel.c:985
eval at .\boot.jl:385 [inlined]
include_string at .\loading.jl:2070
_include at .\loading.jl:2130
include at .\client.jl:489
unknown function (ip: 000001b4aa2f037b)
jl_apply at C:/workdir/src\julia.h:1982 [inlined]
do_call at C:/workdir/src\interpreter.c:126
eval_value at C:/workdir/src\interpreter.c:223
eval_stmt_value at C:/workdir/src\interpreter.c:174 [inlined]
eval_body at C:/workdir/src\interpreter.c:635
jl_interpret_toplevel_thunk at C:/workdir/src\interpreter.c:775
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:934
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:877
ijl_toplevel_eval at C:/workdir/src\toplevel.c:943 [inlined]
ijl_toplevel_eval_in at C:/workdir/src\toplevel.c:985
eval at .\boot.jl:385 [inlined]
eval_user_input at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:150
repl_backend_loop at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:246
#start_repl_backend#46 at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:231
start_repl_backend at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:228
#run_repl#59 at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:389
run_repl at C:\workdir\usr\share\julia\stdlib\v1.10\REPL\src\REPL.jl:375
jfptr_run_repl_95895.1 at C:\Users\Umwelt\AppData\Local\Programs\Julia-1.10.0\lib\julia\sys.dll (unknown line)
#1013 at .\client.jl:432
jfptr_YY.1013_86694.1 at C:\Users\Umwelt\AppData\Local\Programs\Julia-1.10.0\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:1982 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:812
#invokelatest#2 at .\essentials.jl:887 [inlined]
invokelatest at .\essentials.jl:884 [inlined]
run_main_repl at .\client.jl:416
exec_options at .\client.jl:333
_start at .\client.jl:552
jfptr__start_86719.1 at C:\Users\Umwelt\AppData\Local\Programs\Julia-1.10.0\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:1982 [inlined]
true_main at C:/workdir/src\jlapi.c:582
jl_repl_entrypoint at C:/workdir/src\jlapi.c:731
mainCRTStartup at C:/workdir/cli\loader_exe.c:58
BaseThreadInitThunk at C:\WINDOWS\System32\KERNEL32.DLL (unknown line)
RtlUserThreadStart at C:\WINDOWS\SYSTEM32\ntdll.dll (unknown line)
Allocations: 46940446 (Pool: 46891678; Big: 48768); GC: 73
PS C:\Users\Umwelt\Programs\TOF-Tracer2>
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