How-to examples that publish HTML files with code and output. Requires the Core Tools repository. The help examples focus on the CANlab’s interactive object-oriented tools.

Running the examples also serves as a preliminary unit testing frame for the CANlab tools.

Please document errors by posting issues on the CANlab Github page.

Overview ————————————————————————————

overview_fmri_data_object overview_statistic_image_object overview_region_object overview_fmridisplay_object

Visualization ————————————————————————————

plot_montage_of_slices plot_montage_of_multiple_maps plot_blobs_on_3d_surface plot_relationships_between_two_images receiver_operating_characteristic_plot

Data manipulation ————————————————————————————

extract_data_from_regions_of_interest

make_a_group_average_anatomical_underlay_image

convert_a_statistic_image_to_region_object convert_a_statistic_image_to_fmri_data_object

Quality control ———————————————————————————— basic_fmri_data_plot

Analysis ———————————————————————————— parcellate_regions draw_regions_of_interest choose_regions_of_interest_from_atlas

voxelwise_t_test voxelwise_regression

threshold_and_display_a_brain_map

multivariate_prediction_of_a_binary_outcome multivariate_prediction_of_a_continuous_outcome

bootstrap_a_multivariate_predictive_map permutation_test_on_multivariate_predictive_map