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Command-line interface for Cromwell server
License: Apache License 2.0
Go 91.00%
Shell 8.13%
WDL 0.86%
pumbaa's Introduction
I'm a Passionate Bioinformatician and Backend Developer from São Paulo, Brazil.
- 🏢 Currently, making genetic diagnosis fast, accurate, and accessible to everyone who needs it at Mendelics - Genomic Analysis.
- ⚙️ Daily tools:
.py, .wdl, .nf, .cram, .vcf, .fastq, .go
- 🌱 Expanding my skills in Software Architecture and legacy code refactoring
- 💬 Ask me about development, genome assembly, bioinformatics pipelines, Docker, genomic tools and Google Cloud
- 📫 Connect with me at LinkedIn
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pumbaa's Issues
Today, if we use the cli asking for a failed workflow submission we got:
cromwell-cli m -o 753d9b97-cb27-4f7c-b6af-c3f1443f0307
+------+---------+---------+--------+
| TASK | ATTEMPT | ELAPSED | STATUS |
+------+---------+---------+--------+
+------+---------+---------+--------+
This issue is to remind me that would be helpfull to see something like:
cromwell-cli m -o 753d9b97-cb27-4f7c-b6af-c3f1443f0307
+------+---------+---------+--------+
| TASK | ATTEMPT | ELAPSED | STATUS |
+------+---------+---------+--------+
+------+---------+---------+--------+
failures:
- Required workflow input 'RfmixPipe.sample_population_map' not specified
- Required workflow input 'RfmixPipe.chromosomes' not specified
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