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A fast method for analysis of composition of microbiomes

longitudinal_microbiome_analysis_public

mzinbva

papers_supplementary

phylomda

reference-frames

sze_followups_microbiome_2017

zibr

Zero-Inflated Beta Random Effect model

zimed

zippca

Zero-Inflated Probabilistic PCA (ZIPPCA), for dimension reduction and data ordination of multivariate abundance data, and propose an efficient variational approximation method for estimation, inference, and prediction.

zippcalnm

Zero-Inflated Probabilistic PCA framework with logistical normal multinomial distribution (ZIPPCA-LNM), that extends probabilistic PCA from the Gaussian setting to multivariate abundance data, and an empirical Bayes approach was proposed for inferring microbial compositions. An efficient VA algorithm, classification VA, has been developed for fitting this model.