linsalrob Goto Github PK
Name: Rob Edwards
Type: User
Company: Flinders University
Bio: Professor of CS and Biology Writing bioinformatics code to study viruses, phages, and metagenomes.
Twitter: linsalrob
Location: Adelaide, Australia
Rob Edwards's Projects
primer-trimming
Fast C code for identifying and removing primers and adapters
prophagepredictioncomparisons
Comparisons of multiple different prophage predictions
py_fasta_validator
A Python extension of the fasta validator
pyfba
A python implementation of flux balance analysis to model microbial metabolism
qiime_scripts
A few scripts that Rob has written to handle qiime files
qudaich
Qudaich (queries and unique database alignment inferred by clustering homologs) is a software package for aligning sequences.
reducedbacterialproteinsdatabase
A database of a reduced set of bacterial (and perhaps archaeal) proteins
sam
Working with Sam and Bam files using HTSLIBS
sam_reader
A Python class for analyzing many BAM/SAM files.
searchsra
Tools to search through the Sequence Read Archive using XSEDE's Jetstream
searchsratoolkit
Tools for processing data generated by the Search SRA
seed_servers_python
Pythonic servers to access the SEED servers
seqc
C and C++ libraries for working with sequences
shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snoopy
Code for sailing ... mostly manipulating weather and routing
spae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
squeakr
Squeakr: An Exact and Approximate k -mer Counting System
sra-cloud
Tools, tricks, tips, and uses for SRA in the cloud
sra_metadata
Get, parse, and extract information from the SRA metadata files
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
super-focus
A tool for agile functional analysis of shotgun metagenomic data
turbocor
Command line tool for computing gigantic correlation matrices
uccd
Using Machine Language to Compare Ulcerative Colitis and Crohn's Disease
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