Name: Lindsey (Lian Chee Foong)
Type: User
Bio: Post-doctoral Researcher, Shanghai Jiao Tong University School of Med affiliated Renji Hospital
Co-creator of Youtube channel "Liquid Brain Bioinformatics"
Twitter: LianFoong
Blog: www.liquidbrain.org
Lindsey (Lian Chee Foong)'s Projects
I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.com/HelenHeZhu/StemCell)
GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s
Using non-negative matrix factorization (NMF), graph-based clustering, and XGBoost machine learning, we analyze time-series samples and identify cell types for each cluster. Discover how NMF uncovers patterns, graph clustering reveals relationships, and XGBoost predicts and classifies.
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits