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View Code? Open in Web Editor NEWcodes for PRS-Net: Interpretable polygenic risk scores via geometric learning
codes for PRS-Net: Interpretable polygenic risk scores via geometric learning
Hi, thanks for your interesting project. When installing the package to reproduce the training result, I meet an error:
/tmp/pip-build-env-5nfkk1gy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyreadr.libs.lzma.lzma' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pyreadr.libs.lzma.lzma' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pyreadr.libs.lzma.lzma' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pyreadr.libs.lzma.lzma' to be distributed and are
already explicitly excluding 'pyreadr.libs.lzma.lzma' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/tmp/pip-build-env-5nfkk1gy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyreadr.libs.zlib' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pyreadr.libs.zlib' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pyreadr.libs.zlib' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pyreadr.libs.zlib' to be distributed and are
already explicitly excluding 'pyreadr.libs.zlib' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for pyreadr
ERROR: Could not build wheels for pyreadr, which is required to install pyproject.toml-based projects
It seems that the current conda.yml file is not enough. Would you please provide more information? Thanks.
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