Jaffe AE, Straub RE, Shin JH, Tao R, Gao Y, Collado-Torres L, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich B, Maher BJ, Deep-Soboslay A, The BrainSeq Consortium, Cross A, Brandon NJ, Leek JT, Hyde TM, Kleinman JE, Weinberger DR. Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis. Nat Neuro, 2018. In Press.
These are RangedSummarizedExperiment R Objects
These are regular RData objects:
- SCZD vs Control: All Quantified Features, RData
- SCZD vs Control: All Expressed Features, RData
- eQTL: All Significant (~29M) eQTLs, RData. This needs a lot of memory.
- Developmental Changes, Table S3, CSV
- RNA-seq reads: FASTQ via Synapse.org
- Phenotype data: CSV via GitHub, RData via GitHub
- Genotype data: dbGaP - we will share analysis-ready genotype data with researchers that obtain dbGaP access of that accession.
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