Extensions to Bioconductor GenomicFeatures package. Primarily, this implements a more "Gene Centric" view on the world, as opposed to base GenomicFeature's transcript/exon/cds centric view.
Using RefSeq hg19, DUSP13 has some seriously weird alt. splicing behavior. Seems insane that genes w/ mutually exclusive coding regions can be called "the same thing"
The files are saved as chr5.annotated.collapse-cover.up-1000.down-1.stranded.rda instead of chr5.annotated.collapse-cover.up-1000.down-1000.stranded.rda