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ehr_database_modeling

erpnext-medical-data

etl_utils

ETL Utils

excelmerge

Merge two Excel files - match the rows like an SQL join! (exact and fuzzy matching supported). Written in Python + PyQt

extra-datascience-tools

Extra tools to use for data science

health-reference-data

Reference databases for the Unified Health API (UHA)

heval

Medical calculator for intensive care unit

highlight-css

CSS files created from Pygments' and Rouge's built-in styles

hl7demo

igavn

Code and data used to create the cohort of children with IgA vasculitis with nephritis and assess their outcomes

jsonmapping

Transform flat data structures into nested object graphs matching JSON schema definitions.

jvincze84.github.io

kaggleutils

A collection of utilities I use for EDA, feature engineering etc.

kokiri

Random Forest-Based Cohort Comparison and Characterization

laboratorytestresultstandardization

A program to normalize laboratory results.

learn-wdl

Educational materials for learning WDL

lenadocs

lgtm

master_thesis

Working repository for master thesis

mimic-iv-dash

Clinical terminology annotation dashboard created using Plotly Dash & MIMIC-IV database.

mintlifylena

nbdev-mkdocs

Extension to nbdev for generating docs with Material for Mkdocs

netlify-auth-demo

Demo for integrating GitHub OAuth with a Netlify site

nifty

Nifty Python toolbox - utilities, one-liners, ML & Data Science tools

notebooker

Productionise & schedule your Jupyter Notebooks as easily as you wrote them.

omop2obo

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

openfoodfacts-python

Python package for Open Food Facts

openpath-pipeline

Pipeline for ingesting openpath data sources

pandas_examples

Demo of helpful utility functions used in ETL

pandasvault

Advanced Pandas Vault — Utilities, Functions and Snippets (by @firmai).