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Issue installing gensim to jupyter machine
While trying to follow along with Build: Word2vec part 1, Getting the following error message output:
Requirement already satisfied: six in /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages (from nltk) (1.15.0)
Collecting gensim
Using cached gensim-4.2.0.tar.gz (23.2 MB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy>=1.17.0 in /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages (from gensim) (1.19.5)
Requirement already satisfied: scipy>=0.18.1 in /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages (from gensim) (1.5.3)
Requirement already satisfied: smart_open>=1.8.1 in /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages (from gensim) (6.0.0)
Building wheels for collected packages: gensim
Building wheel for gensim (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/ec2-user/anaconda3/envs/python3/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"'; __file__='"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3hrsq7r7
cwd: /tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/
Complete output (463 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/gensim
copying gensim/nosy.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/utils.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/interfaces.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/downloader.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/__init__.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/matutils.py -> build/lib.linux-x86_64-3.6/gensim
creating build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/preprocessing.py -> build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/porter.py -> build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/__init__.py -> build/lib.linux-x86_64-3.6/gensim/parsing
creating build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/logentropy_model.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/basemodel.py -> build/lib.linux-x86_64-3.6/gensim/models
<... removed to meet git issue length >
copying gensim/test/test_indirect_confirmation.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_nmf.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_big.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_text_analysis.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/svd_error.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_utils.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/simspeed.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_logentropy_model.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_datatype.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_glove2word2vec.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_probability_estimation.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_dtm.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_rpmodel.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_tmdiff.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_similarities.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_parsing.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_api.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_word2vec.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/utils.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_lee.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_coherencemodel.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_similarity_metrics.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_fasttext.py -> build/lib.linux-x86_64-3.6/gensim/test
copying gensim/test/test_hdpmodel.py -> build/lib.linux-x86_64-3.6/gensim/test
3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_2.1.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_2.2.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_2.3.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_3.0.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_3.1.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_3.2.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_3.3.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
copying gensim/test/test_data/old_d2v_models/d2v_3.4.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_d2v_models
creating build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.12.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.12.1.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.12.2.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.12.3.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.12.4.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.13.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.13.1.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.13.2.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.13.3.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_0.13.4.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_1.0.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_1.0.1.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_2.0.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_2.1.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_2.2.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_2.3.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.0.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.1.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.2.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.3.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.4.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/corpora/_mmreader.c -> build/lib.linux-x86_64-3.6/gensim/corpora
copying gensim/corpora/_mmreader.pyx -> build/lib.linux-x86_64-3.6/gensim/corpora
running build_ext
building 'gensim.models.word2vec_inner' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/gensim
creating build/temp.linux-x86_64-3.6/gensim/models
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/word2vec_inner.c -o build/temp.linux-x86_64-3.6/gensim/models/word2vec_inner.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/models/word2vec_inner.c:706:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gensim/models/word2vec_inner.c: In function ‘__pyx_pf_6gensim_6models_14word2vec_inner_train_batch_sg.isra.18’:
gensim/models/word2vec_inner.c:5059:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_6 = (((__pyx_v_vocab_sample_ints[__pyx_t_11]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c.next_random))) != 0);
^
gensim/models/word2vec_inner.c: In function ‘__pyx_pf_6gensim_6models_14word2vec_inner_2train_batch_cbow.isra.17’:
gensim/models/word2vec_inner.c:6231:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_7 = (((__pyx_v_vocab_sample_ints[__pyx_t_12]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c.next_random))) != 0);
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/word2vec_inner.o -o build/lib.linux-x86_64-3.6/gensim/models/word2vec_inner.cpython-36m-x86_64-linux-gnu.so
building 'gensim.corpora._mmreader' extension
creating build/temp.linux-x86_64-3.6/gensim/corpora
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/corpora/_mmreader.c -o build/temp.linux-x86_64-3.6/gensim/corpora/_mmreader.o
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/corpora/_mmreader.o -o build/lib.linux-x86_64-3.6/gensim/corpora/_mmreader.cpython-36m-x86_64-linux-gnu.so
building 'gensim.models.fasttext_inner' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/fasttext_inner.c -o build/temp.linux-x86_64-3.6/gensim/models/fasttext_inner.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/models/fasttext_inner.c:707:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gensim/models/fasttext_inner.c: In function ‘__pyx_f_6gensim_6models_14fasttext_inner_fasttext_fast_sentence_sg_neg’:
gensim/models/fasttext_inner.c:2346:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
^
gensim/models/fasttext_inner.c:2612:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
^
In file included from gensim/models/fasttext_inner.c:715:0:
gensim/models/fasttext_inner.c: At top level:
gensim/models/voidptr.h:8:15: warning: ‘PyCObject_AsVoidPtr’ defined but not used [-Wunused-function]
static void * PyCObject_AsVoidPtr(PyObject *obj)
^
gensim/models/fasttext_inner.c: In function ‘__pyx_f_6gensim_6models_14fasttext_inner_populate_ft_config’:
gensim/models/fasttext_inner.c:4807:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_6 = (((__pyx_v_vocab_sample_ints[__pyx_t_14]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c->next_random))) != 0);
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/fasttext_inner.o -o build/lib.linux-x86_64-3.6/gensim/models/fasttext_inner.cpython-36m-x86_64-linux-gnu.so
building 'gensim._matutils' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/_matutils.c -o build/temp.linux-x86_64-3.6/gensim/_matutils.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/_matutils.c:701:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/_matutils.o -o build/lib.linux-x86_64-3.6/gensim/_matutils.cpython-36m-x86_64-linux-gnu.so
building 'gensim.models.nmf_pgd' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/nmf_pgd.c -o build/temp.linux-x86_64-3.6/gensim/models/nmf_pgd.o
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/nmf_pgd.o -o build/lib.linux-x86_64-3.6/gensim/models/nmf_pgd.cpython-36m-x86_64-linux-gnu.so
building 'gensim.similarities.fastss' extension
creating build/temp.linux-x86_64-3.6/gensim/similarities
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/similarities/fastss.c -o build/temp.linux-x86_64-3.6/gensim/similarities/fastss.o
gensim/similarities/fastss.c: In function ‘ceditdist’:
gensim/similarities/fastss.c:725:9: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH tmpi = 0; tmpi <= len_s1; tmpi++) row2[tmpi] = tmpi;
^
gensim/similarities/fastss.c:725:9: note: use option -std=c99 or -std=gnu99 to compile your code
gensim/similarities/fastss.c:727:9: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH i2 = 0; i2 < len_s2; i2++) {
^
gensim/similarities/fastss.c:738:13: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH i1 = 0; i1 < len_s1; i1++) {
^
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for gensim
Running setup.py clean for gensim
Failed to build gensim
Installing collected packages: gensim
Running setup.py install for gensim ... error
ERROR: Command errored out with exit status 1:
command: /home/ec2-user/anaconda3/envs/python3/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"'; __file__='"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-v5nfdk_b/install-record.txt --single-version-externally-managed --compile --install-headers /home/ec2-user/anaconda3/envs/python3/include/python3.6m/gensim
cwd: /tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/
Complete output (463 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/gensim
copying gensim/nosy.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/utils.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/interfaces.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/downloader.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/__init__.py -> build/lib.linux-x86_64-3.6/gensim
copying gensim/matutils.py -> build/lib.linux-x86_64-3.6/gensim
creating build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/preprocessing.py -> build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/porter.py -> build/lib.linux-x86_64-3.6/gensim/parsing
copying gensim/parsing/__init__.py -> build/lib.linux-x86_64-3.6/gensim/parsing
creating build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/logentropy_model.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/basemodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/coherencemodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/lda_dispatcher.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/tfidfmodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/ldamulticore.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/lsi_worker.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/lsi_dispatcher.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/hdpmodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/ensemblelda.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/ldamodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/fasttext.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/rpmodel.py -> build/lib.linux-x86_64-3.6/gensim/models
copying gensim/models/translation_matrix.py -> build/lib.linux-x86_64-3.6/gensim/models
3.6/gensim/test/test_data/old_w2v_models
copying gensim/test/test_data/old_w2v_models/w2v_3.4.0.mdl -> build/lib.linux-x86_64-3.6/gensim/test/test_data/old_w2v_models
copying gensim/corpora/_mmreader.c -> build/lib.linux-x86_64-3.6/gensim/corpora
copying gensim/corpora/_mmreader.pyx -> build/lib.linux-x86_64-3.6/gensim/corpora
running build_ext
building 'gensim.models.word2vec_inner' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/gensim
creating build/temp.linux-x86_64-3.6/gensim/models
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/word2vec_inner.c -o build/temp.linux-x86_64-3.6/gensim/models/word2vec_inner.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/models/word2vec_inner.c:706:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gensim/models/word2vec_inner.c: In function ‘__pyx_pf_6gensim_6models_14word2vec_inner_train_batch_sg.isra.18’:
gensim/models/word2vec_inner.c:5059:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_6 = (((__pyx_v_vocab_sample_ints[__pyx_t_11]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c.next_random))) != 0);
^
gensim/models/word2vec_inner.c: In function ‘__pyx_pf_6gensim_6models_14word2vec_inner_2train_batch_cbow.isra.17’:
gensim/models/word2vec_inner.c:6231:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_7 = (((__pyx_v_vocab_sample_ints[__pyx_t_12]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c.next_random))) != 0);
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/word2vec_inner.o -o build/lib.linux-x86_64-3.6/gensim/models/word2vec_inner.cpython-36m-x86_64-linux-gnu.so
building 'gensim.corpora._mmreader' extension
creating build/temp.linux-x86_64-3.6/gensim/corpora
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/corpora/_mmreader.c -o build/temp.linux-x86_64-3.6/gensim/corpora/_mmreader.o
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/corpora/_mmreader.o -o build/lib.linux-x86_64-3.6/gensim/corpora/_mmreader.cpython-36m-x86_64-linux-gnu.so
building 'gensim.models.fasttext_inner' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/fasttext_inner.c -o build/temp.linux-x86_64-3.6/gensim/models/fasttext_inner.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/models/fasttext_inner.c:707:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gensim/models/fasttext_inner.c: In function ‘__pyx_f_6gensim_6models_14fasttext_inner_fasttext_fast_sentence_sg_neg’:
gensim/models/fasttext_inner.c:2346:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
^
gensim/models/fasttext_inner.c:2612:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
^
In file included from gensim/models/fasttext_inner.c:715:0:
gensim/models/fasttext_inner.c: At top level:
gensim/models/voidptr.h:8:15: warning: ‘PyCObject_AsVoidPtr’ defined but not used [-Wunused-function]
static void * PyCObject_AsVoidPtr(PyObject *obj)
^
gensim/models/fasttext_inner.c: In function ‘__pyx_f_6gensim_6models_14fasttext_inner_populate_ft_config’:
gensim/models/fasttext_inner.c:4807:47: warning: ‘__pyx_v_vocab_sample_ints’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_6 = (((__pyx_v_vocab_sample_ints[__pyx_t_14]) < __pyx_f_6gensim_6models_14word2vec_inner_random_int32((&__pyx_v_c->next_random))) != 0);
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/fasttext_inner.o -o build/lib.linux-x86_64-3.6/gensim/models/fasttext_inner.cpython-36m-x86_64-linux-gnu.so
building 'gensim._matutils' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/_matutils.c -o build/temp.linux-x86_64-3.6/gensim/_matutils.o
In file included from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from gensim/_matutils.c:701:
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/_matutils.o -o build/lib.linux-x86_64-3.6/gensim/_matutils.cpython-36m-x86_64-linux-gnu.so
building 'gensim.models.nmf_pgd' extension
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/models/nmf_pgd.c -o build/temp.linux-x86_64-3.6/gensim/models/nmf_pgd.o
gcc -pthread -shared -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -L/home/ec2-user/anaconda3/envs/python3/lib -Wl,-rpath=/home/ec2-user/anaconda3/envs/python3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/gensim/models/nmf_pgd.o -o build/lib.linux-x86_64-3.6/gensim/models/nmf_pgd.cpython-36m-x86_64-linux-gnu.so
building 'gensim.similarities.fastss' extension
creating build/temp.linux-x86_64-3.6/gensim/similarities
gcc -pthread -B /home/ec2-user/anaconda3/envs/python3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ec2-user/anaconda3/envs/python3/include/python3.6m -I/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/numpy/core/include -c gensim/similarities/fastss.c -o build/temp.linux-x86_64-3.6/gensim/similarities/fastss.o
gensim/similarities/fastss.c: In function ‘ceditdist’:
gensim/similarities/fastss.c:725:9: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH tmpi = 0; tmpi <= len_s1; tmpi++) row2[tmpi] = tmpi;
^
gensim/similarities/fastss.c:725:9: note: use option -std=c99 or -std=gnu99 to compile your code
gensim/similarities/fastss.c:727:9: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH i2 = 0; i2 < len_s2; i2++) {
^
gensim/similarities/fastss.c:738:13: error: ‘for’ loop initial declarations are only allowed in C99 mode
for (WIDTH i1 = 0; i1 < len_s1; i1++) {
^
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/ec2-user/anaconda3/envs/python3/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"'; __file__='"'"'/tmp/pip-install-58c9w4r7/gensim_343639efd468438c9fd475c361faee17/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-v5nfdk_b/install-record.txt --single-version-externally-managed --compile --install-headers /home/ec2-user/anaconda3/envs/python3/include/python3.6m/gensim Check the logs for full command output.```
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