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art_src_mountrainier_linux

Reupload of the ART short read sequence simulator that is currently 404'ed on NCBI

bicseq_pipeline

canseq_pipeline

Pipeline for de novo assemblies for the CanSeq150 project

denovo_signature_pipeline

dupcaller

ksp-interstellar-extended

continuation of KSP Interstellar

lculibrk

ploidetect

Tumour purity, ploidy, and copy number variation from whole-genome sequence data

ploidetect-package

Interpretable detection of tumour purity, ploidy, copy number and LOH from whole-genome sequence data

ploidetect-pipeline

Pipeline for running data processing and preparation for Ploidetect

purple_pipeline

sequenza_pipeline

sigprofilerclusters

Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.

strelka

Strelka2 germline and somatic small variant caller

vep_project

Simple tool for annotating VCFs using Ensembl's VEP API

wgs_pipelines

Full bioinformatics stack of a metadata DBMS, an API for the DBMS, and Snakemake pipelines for executing reproducible analyses