laurentnoe / yass Goto Github PK
View Code? Open in Web Editor NEWgenomic alignment similarity search tool
Home Page: https://bioinfo.univ-lille.fr/yass/
License: GNU General Public License v3.0
genomic alignment similarity search tool
Home Page: https://bioinfo.univ-lille.fr/yass/
License: GNU General Public License v3.0
I want to make the dotplot after yass
I have this error:
command: ../yass/yass2dotplot.php Prueba
/usr/bin/env: ‘php’: No such file or directory
I need to install something more?
thanks
Currently, yass runs with only single threads, and is slow for large fasta files.
Is it possible to speed up yass by running parallelly on more threads?
Thanks.
Bonsoir Mr Noé,
Je viens d'installer et compiler Yass et réussi avec succès un premier test (yass file1.fa file2.fa > output.yop)
J'ai voulu ensuite générer le dotplot correspondant au résultat (./yass2dotplot.php output.yop filename1="file1" filename2="file2") mais une erreur est apparue: -bash: ./yass2dotplot.php: Permission non accordée
Je débute sous Linux, aussi je pense qu'il s'agit plutôt d'une erreur de mon environnement système... Si vous avez une idée, je suis preneur. Je vous joins le fichier yass2dotplot.php que j'utilise.
yass2dotplot.php.txt
Merci par avance de votre aide et temps précieux.
Cdlt,
Stanislas Morand
Fatal error: Uncaught Error: Call to undefined function ImageCreate() in /home/dnanexus/yass/yass2dotplot.php:236
Stack trace:
#0 {main}
thrown in /home/dnanexus/yass/yass2dotplot.php on line 236
Hi,
I am using yass to align sequences and create a dotplot. How can I modify windowsize ?
I also notices that the is:issue wdsize.mat files creates come out empty. Is that a problem ?
Thank you very much in advance,
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