This is the repository for the development of simple bioinformatics scripts.
Here is a list of all available scripts.
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- This performs a simple protein BLAST on the NCBI NR database based on a user provided fasta file. This can perform singular BLASTs and a collection of BLASTs.
- Sample data
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Collect Greatest Open Reading Frame
- This collects the greatest translated nucleotide sequence from a collection of open reading frames.
- Sample data
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- Collects all of the names of the sequences within a fasta query file and outputs it to a file.
- Sample data
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Retrieve Fasta Sequences From Fasta Query
- Given a list of fasta names and a fasta query file with those given names, retrieve the fasta sequences in the fasta query file and output them to a fasta query file.
- Sample data 1
- Sample data 2
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- Given a directory containing all BLAST results, the script will rename all of the results' files to match the name of the BLAST.