kids-first / kf-api-portal-reports Goto Github PK

Worked in dev, but crashes in QA.

Investigation is underway.

From @allisonheath :

wondering about the column order? should we put all IDs to the left for example?
looking at the Diagnoses / Histological Diagnoses tabs
so it'd be like <Participant ID> <External Participant ID> <Biospecimen ID> <External Sample ID> <External Aliquot ID> ?

@rosibaj commented on Fri Nov 16 2018

We need to update the columns that are exported in the Biospecimen Report download. What would be awesome is if this worked on a * system, so that if new fields get added the report updates automatically!

All fields on the biospecimen entity should be exported. Currently these fields are included:

Kf Id	 
External Sample Id	 
External Aliquot Id	 
Age At Event Days	 
Composition	 
Analyte Type	 
Concentration Mg Per Ml	 
Shipment Date	 
Shipment Origin	

These fields need to be added:

Tumor Descriptor
Method of Sample Procurement
Consent Type
dbGap Consent Code
ncit_id_anatomical_site
ncit_id_tissue_type
Sequencing_center_id
Shipment_date
Shipment_origin
Source_text_anatomical_site
Source_text_tissue_type
source_text_tumor_descriptor
spatial_descriptor
uberon_id_anatomical_site
Volume ul

**NOTE: this should use the Display name from Arranger from the field

@baileyckelly commented on Mon Nov 19 2018

Per conversations tonight with @allisonheath - We're thinking we should just add all biospecimen fields to the download.

@rosibaj commented on Tue Nov 20 2018

thanks for confirming @baileyckelly

@nyanofthemoon commented on Mon Dec 10 2018

@hlminh2000 could you kindly help me get set-up? :}