kids-first / devops-requests Goto Github PK

Please describe needed access to the best of your ability:
First name: Mateusz
Last name: Koptyra
Google Email: [email protected]
Institution: CHOP/D3b
Position: Lab Director/Liquid Biopsy Study PI
Study Name(CBTN ID preferred): Liquid Biopsy
Purpose of the access: Review images for Liquid Biopsy cohort as study PI
Notes: Contact Shannon Robins or Elizabeth Appert for questions

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Jeff Ware
Google Email: [email protected]
Institution: Hospital of the University of Pennsylvania
Position: radiologist
StudyName(CBTN ID preffered): LGG, liquid bioposy
Purpose of the access: Penn collaborator
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Rachel
Last name: Madhogarhia
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Master's Student
StudyName(CBTN ID preffered): LGG
Purpose of the access: Collaborator for radiogenomics project with CBICA
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Payal
Last name: Jain
Google Email: [email protected]
Institution: CHOP
Position: Scientist
StudyName(CBTN ID preffered): PNOC003
Purpose of the access: Reviewing imaging data to access tumor primary site
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

what/why needed

Ashion will be our new data generator for PNOC008 patients. Need to give them access to our PNOC008 bucket source folder

what bucket/path

kf-study-us-east-1-prd-sd-8y99qzjj/source/ashion/

what permission

Read and write

who needed this

Jesscia from Ashion [email protected]

when

asap as the very next patient will be sequenced by Ashion.

Please describe needed access to the best of your ability:
First name: Giulia
Last name: Fadda
Google Email: [email protected]
Institution: McGill
Position: Physician
StudyName(CBTN ID preffered):
Purpose of the access: Collaborator (Brenda Banwell's team)
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Mariam
Last name: Aboian
Google Email: [email protected]
Institution: Yale University
Position: Assistant Professor and PNOC/CBTN Imaging Working Group Member
StudyName(CBTN ID preffered): HGG
Purpose of the access: Per request: " Our group focuses on characterizing the imaging features within pediatric brain tumors that predict tumor molecular subgroups and patient outcomes. The goal of our project is to develop imaging based classification of pediatric high grade gliomas that will stimulate discovery of novel imaging biomarkers that predict driver mutations in these tumors. "
Notes: n/a

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Please describe needed access to the best of your ability:
First name: Derek
Last name: Oldridge
Google Email: [email protected]
Institution: Children's Hospital of Philadelphia
Position: Lab Medicine Fellow
StudyName(CBTN ID preffered): CBTTC_0033
Purpose of the access: Derek is on Dr. Cole's team for her approved project CBTTC_0033. They need to be able to view/analyze the images for a cohort of subjects for which they received samples.
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Susan
Last name: Sotardi
Google Email: [email protected]
Institution: CHOP
Position: Radiologist
StudyName(CBTN ID preffered):
Purpose of the access: Collaborator on ongoing D3b research projects
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Milica
Last name: Miletic
Google Email: [email protected]
Institution:Seven Bridges Genomics
Purpose of the access: INCLUDE imaging pilot

First name: Bojan
Last name: Stankic
Google Email: [email protected]
Institution:Seven Bridges Genomics
Purpose of the access: INCLUDE imaging pilot

First name: Boris
Last name: Pejic
Google Email: [email protected]
Institution:Seven Bridges Genomics
Purpose of the access: INCLUDE imaging pilot

First name: Zorana
Last name: Mitrovic
Google Email: [email protected]
Institution:Seven Bridges Genomics
Purpose of the access: INCLUDE imaging pilot

EgoUI is a web interface that allows admins to manage different accesses to the portalUI. The app has been ported to AWS amplify.

However, the site in its current state is useless.

The configuration is incomplete:

• we should use the correct values for env variables (REACT_APP_API; REACT_APP_EGO_CLIENT_ID)

reminder: I think that currently an Iam role with pattern (/amplify/*) is in usage so there is maybe that part that you want to make more restrictive.

Please describe needed access to the best of your ability:
First name: Sabine
Last name: Mueller
Google Email: [email protected]
Institution: UCSF
Position: SC Member
StudyName(CBTN ID preffered): CBTN_D0143
Purpose of the access: The main objective of this project is to assess if the CBTN data can be used to perform a synthetic trial mimicking a prospective clinical trial that was conducted via PNOC (PNOC001).
In order to perform this project, we like to collect data and imaging on all patients with recurrent LGG who were treated with everolimus that are part of the CBTN cohort. Images will undergo central imaging review and assess for clinical outcome with the same endpoints used for the actual clinical trial
Notes: There are Additional users listed below
Michael Prados, [email protected]
Benjamin H Kann, [email protected]
Kevin X Liu, [email protected]
Rifaquat Rahman, [email protected]

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Joel Plourde
Email: [email protected]
Institution: Sainte-Justine
Position: Back-end developer
Purpose of the access: Will need access to Github as a developer to work on the projects
Notes:
Github username: joelplourde3

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Huaizhi Geng
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Research Associate
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

First name: Avital
Last name: Kelman
Google Email: [email protected]
Institution: D3b
StudyName(CBTN ID preffered): all of them?
Purpose of the access: test uploading lots of images to flywheel

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Du Wang
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Research Assistant
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability: Need to create a Flywheel user account for a PI at Boston Children's Hospital.
Full name: Benjamin Kann
Google Email: [email protected]
Institution: Boston Children's Hospital
Position: Physician
StudyName(CBTN ID preffered): HGG, LGG (duplicate copy projects)
Purpose of the access: PI needs to access Flywheel images for research purposes
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Sherjeel
Last name: Arif
Google Email: [email protected]
Institution: Penn Medicine
Position: Image Analyst
StudyName(CBTN ID preffered): LGG
Purpose of the access: To process data for ongoing Penn collaboration
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Kristina
Last name: Cole
Google Email: [email protected]
Institution: Children's Hospital of Philadelphia
Position: Attending Physician, Oncology
StudyName(CBTN ID preffered): CBTTC_0033
Purpose of the access: Dr. Cole would like to view/analyze the MRI images for a cohort of subjects for which she got samples for her CBTN approved project.
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Sadhana
Last name: Jackson
Google Email: [email protected]
Institution: NIH
Position: Pediatric Neuro-oncologist, Head - Developmental Therapeutics and Pharmacology.
StudyName(CBTN ID preffered): CBTTC_0060
Purpose of the access: Dr. Sadhana Jackson would like to have access to high grade glioma MRIs for her study.
Notes:

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Please describe needed access to the best of your ability:

StudyName(CBTN ID preffered): Sick Kids Pilot
Purpose of the access: Access to "SickKids" group and all the projects under that, i.e. SickKids/Clinical, SickKids/Research
Notes: This is for a pilot study for usage of Flywheel, currently using gmails for these users, but in the future hopefully can switch over to institutional credentials. Email gathered via thread titled "awaiting response from allison remo and alex- can we work with the demo?"

Approved by me as I'm submitting the ticket :) Please let me know when done and I can email the group (there does still seem to be issues with their data import I want to let them know about in the email).

Please describe needed access to the best of your ability:
Full name: Jo Lynne Rokita
Google Email: [email protected]
Institution: CHOP
Position: Supervisory Bioinformatics Scientist
StudyName(CBTN ID preffered): sd-bhjxbdqk, sd-m3dbxd12, sd-8y99qzjj
Purpose of the access:
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Boban
Last name: Pajic
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

First name: Sinan
Last name: Yavuz
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

First name: Vesna
Last name: Pajic
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

First name: Milan
Last name: Kovacevic
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

First name: Garrett
Last name: Rupp
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

First name: Jack
Last name: DiGiovanna
Google Email: [email protected]
Institution: Seven Bridges Genomics
StudyName(CBTN ID preffered):
Purpose of the access: INCLUDE imaging pilot

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability: Dr. Buccoliero is working on an angiocentric gliomas cohort (CBTN_D0092) and needs access to MRI images of subject C116112 to determine the exact location of the tumor as pathology report and MRI written reports aren't specific enough.

First name: Anna Maria
Last name: Buccoliero
Google Email: [email protected]
Institution: Meyer Hospital Florence Italy
Position: Director Pathology
StudyName(CBTN ID preffered): CBTTC_D0092
Purpose of the access: Dr. Buccoliero needs access to MRI sessions of subject C116112 to determine if the location of tumor as written reports aren't specific enough.

Notes: Please contact Jennifer Mason ([email protected]) or Thinh Nguyen ([email protected]) if there are any questions.

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Alessandra
Last name: Rigamonti
Google Email: [email protected]
Institution: CHOP/ Drexel University School of Medicine
Position: Summer Student / 2nd year Medical Student
StudyName(CBTN ID preffered): LGG Liquid Biopsy
Purpose of the access: Summer Research work
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Tingyu Wang
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Research Assistant
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Rachel
Last name: Yan
Google Email: [email protected]
Institution: Cornell
Position:
StudyName(CBTN ID preffered): CBTN_D0125
Purpose of the access: To review images for specific C IDs

Please describe needed access to the best of your ability:
First name: Marianne
Last name: Aznar
Google Email:
Institution: University of Manchester
Position: Senior Lecturer
StudyName(CBTN ID preffered): CBTN_D0148
Purpose of the access: To view images along with the clinical data
Notes: Histologies of interest: Brainstem Glioma-DIPG
Brainstem Glioma-NOS
Brainstem Glioma-tectal
Ganglioma
Glial-neuronal tumor NOS
HGG/astrocytoma(WHO grade III/IV)
LGG/astrocytoma(WHO grade I/II)
Oligo
SEGA

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Olivier Castro-Perrier
Email: [email protected] (not linked to his actual github account)
Institution: CHU Sainte-Justine
Position: Front-End developer
Purpose of the access: New front-end developer starting today in the CHUSJ team.
Notes: Github username: oliviercperrier // [email protected]

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: NA
Last name: NA
Google Email: [email protected]
Institution: CHOP
Position: Neurosurgery Residents
StudyName(CBTN ID preffered):
Purpose of the access: to work on tumor segmentations
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Neda
Last name: Haj-Hosseini
Google Email (associated with your Flywheel account):
Projects to grant access to: Listing in order of priority- LGG (incl. Oligodendrogliomas and Astrocytomas) , Medulloblastoma, Ependymoma, ATRT, Glanglioma, Cranios, Choroid Plexus Tumors, Meningioma, Brainstem Gliomas: DIPG
Level of access [Read-Only, Read-Write, Admin]:
Reason for access: Received via Data Access Request
clinicalDataFileRepo_20210713.xlsx

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Jean-Philippe Thibert
Email: [email protected]
Institution: Sainte-Justine
Position: Business analyst / Product Owner for KF, Include and CFDE
Purpose of the access:
Notes: github username: jthib077

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Ying Xiao
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Professor of Radiation Oncology
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: PI needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Thinh
Last name: Nguyen
Google Email: [email protected]
Institution: CHOP - D3b CRU team
Position: CRA for CBTN/Liquid Biopsy
StudyName (CBTN ID prefered): Need access to all D3b projects
Purpose of the access: Bin will be pulling all accession numbers for CHOP subjects. Needs access to existing projects to see what's already been pulled
Notes: Can match Shannon Robins level of access

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Jena
Last name: Lilly
Google Email (associated with your Flywheel account):[email protected]
Projects to grant access to: CBTN
Level of access [Read-Only, Read-Write, Admin]: Read-Only
Reason for access: Demo

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Anahita Fathi Kazerooni
Google Email: [email protected]
Institution: Perelman School of Medicine
Position: Postdoctoral Researcher
StudyName(CBTN ID preffered): LGG
Purpose of the access: Penn collaborator
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability: Looking for imaging access via Flywheel for training machine-learning algorithms in tumor identification and discovery.

2 Users:
First name: Keshwyn
Last name: Annauth
Google Email: [email protected]
Position: Postdoctoral Researcher

First name: Patrick
Last name: Hales
Google Email: [email protected]
Position: Principle Investigator

Institution: University College London
StudyName(CBTN ID preffered): CBTTC_D0110
Purpose of the access: (from their CBTN abstract)

We intend to develop a set of tools which will use artificial intelligence (AI) to aid with the clinical management of pediatric brain tumors. These tools will automatically detect brain tumors in MRI scans, and provide predictions as to what subtype of tumor the patient has. We will also use AI to help detect early signs of disease progression.

Notes:

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Please create an email account for the PC4C study team to receive requests from individuals interested in donating or learning more about the study. Please this domain: "[email protected]"

Please describe needed access to the best of your ability:
Full name: Jennifer Wei Zou
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Faculty Physicist
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Currently, there is no way to easily fetch data locally from our ES cluster (QA).

Having a local copy of that data would allow devs to make much more testing when developing.

Therefore, having the possibility 1) to execute a script that take a snapshot of the cluster and dump it in S3 2) to have the permission to access the snapshot in S3

Note: I verified with Jeremy that there is no sensible data in QA.

Please describe needed access to the best of your ability:
First name: Rohan
Last name: Bareja
Google Email: [email protected]
Institution: Case Western Reserve University
Position: Project Lead
StudyName(CBTN ID preffered): CBTN_D0130
Purpose of the access: Beta testers
Notes: Requires "Read-Only" access to the LGG, HGG and Medullo cohorts

First name: Pallavi
Last name: Tiwari
Google Email: [email protected]
Institution: Case Western Reserve University
Position: Primary Investigator
StudyName(CBTN ID preffered): CBTN_D0130
Purpose of the access: Beta testers
Notes: Requires "Read-Only" access to the LGG, HGG and Medullo cohorts
PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Diogo Oliveira
Email: [email protected]
Institution: Sainte-Justine
Position: Senior Back-end developer
Purpose of the access: Will need to have access to Github to be able to work on the different projects as a developer
Notes:
Github username --> aodiogo
Email linked to account --> [email protected]

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Hannah
Last name: Anderson
Google Email: [email protected]
Institution: Penn Medicine & CHOP
Position: Clinical Research Coordinator
StudyName(CBTN ID preferred): LGG
Purpose of the access: Penn collaborator
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Yanran Joyce
Last name: Wang
Google Email: [email protected]
Institution: Stanford University
Position: Postdoc Research fellow
StudyName(CBTN ID preffered): CBTN_D0154
Purpose of the access: View images as a part of the project (Title: Predicting distant metastasis and chemotherapy benefit in pediatric brain cancer)
Notes: The cohort of interest is Medulloblastoma

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Zezhong
Last name: Ye
Google Email: [email protected]
Institution: Brigham and Women's Hospital
Position: Post-doctoral fellow
StudyName(CBTN ID preffered): LGG
Purpose of the access: Research on BRAF/radiomic signatures of LGG
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Benjamin
Last name: Kann
Google Email: [email protected]
Institution: Boston Children's Hospital/Brigham and Women'sHospital/Dana-Farber Cancer Institute, HarvardMedical School
Position: Instructor, Radiation Oncology
StudyName(CBTN ID preffered): CBTN_D0122
Purpose of the access: As described in their proposal...

We will develop non-invasive, imaging-based signatures to predict underlying BRAF-alterations and molecular subtype.

Notes: This group needs access to LGG images.

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Sangho Lee
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Research Associate
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Bailey
Last name: Farrow
Google Email: [email protected]
Institution: D3b
Position: Data Operations Lead
StudyName(CBTN ID preffered):
Purpose of the access:
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
First name: Sina
Last name: Bagheri
Google Email: [email protected]
Institution: Penn Medicine
Position: Radiology Resident
StudyName(CBTN ID preffered):
Purpose of the access: TIRU collaborator, will be involved with image processing
Notes:

PLEASE NOTE THIS TICKET REQUIRES APPROVAL

Please describe needed access to the best of your ability:
Full name: Chibueze Uche
Google Email: [email protected]
Institution: University of Pennsylvania
Position: Research Associate
StudyName(CBTN ID preffered): Medullo cohort (duplicate copy project)
Purpose of the access: UPenn team member needs to access Flywheel images for research purposes as part of the ongoing collaboration between CBTN the the radiation oncology department at UPenn

PLEASE NOTE THIS TICKET REQUIRES APPROVAL