kids-first Goto Github PK
Name: Kids First Data Resource Center
Type: Organization
Bio: Working Together to Put Kids First
Blog: http://kidsfirstdrc.org
Name: Kids First Data Resource Center
Type: Organization
Bio: Working Together to Put Kids First
Blog: http://kidsfirstdrc.org
Archived for reference active development at https://github.com/uc-cdis/kf-dictionary
:bar_chart: UI for Authentication and Authorization services
Import clinical data into portal
Code taking data from s3 to elasticsearch
Repository for Germline CNV, SNV, and SV Tools and Workflows
Demo Test Ingest Package
:microscope: Joint genotyping workflow for Kids-First DRC
:factory: Application for storing user api tokens from third party services.
:closed_lock_with_key: A lambda that can be used as an Authorizer for AWS API Gateway.
🔊 Notifications for Data Tracker events
📃 Event compactor lambda for dataservice events
📁 Microservice to register Genomic Files into the Data Service
🏥 Check the health of various services
This lambda consume events from sqs and update elasticsearch member index
📊 Data quality reports
💬 Notifications for Releases
:arrows_clockwise: Periodically updates dbgap consent code from dbgap xml
🏭 Kids First Data Ingest Library
This is a dev-to-production repo for the Kids First Long reads pipeline
🔥 FHIR Data Model for Kids First
💡 Kids First OMOP Common Data Model Experimentation
This is a port of MSKCCs vcf2maf repository, release v1.16.19. We have modified their Dockerfile and dropped deprecated fields from their maf output to suit the needs of Kids First and pedcBioportal
🚧 Imports into the experimental Kids First OMOP Database
:family: Build pedigree files from Kids First Data
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We are working to build community through open source technology. NB: members must have two-factor auth.
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