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python-for-bioinformatics

Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

sanbomics_scripts

scripts and notebooks from sanbomics

sars-cov-2_lentiviral_pseudotype

pseudotyping lentiviral virions with SARS-CoV-2 Spike

sccancer

A package for automated processing of single cell RNA-seq data in cancer

scmet

Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

scripts

singlecellomics

somde

Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

spatialinfercnv

Clone Calling from Visium Spatial Transcriptomics of Cancer samples

spatialtranscriptanalysis

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

std-nb

Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018

t-loc

targetsequence

wechat

wechat端代码

wgbs-pipeline

ENCODE whole-genome bisulfite sequencing (WGBS) pipeline