poetic's Introduction

Kevin Wang

He/Him/His. Currently working on school, writing quirky software, and most likely watching YouTube :)

What I like:

📊📉Statistics, machine learning, and data science
💻🖱Digital humanities
📚📔Poetry and fiction
😍Monchhichis, 🏞 Nature, 🥈Fitness, 🎧Audio

Projects and Publications:

CytofDR

Wang et al. (2023) in Nature Communications
A generalizable dimension reduction (DR) framework
Run and evaluate DR all in one place
For CyTOF and beyond with customizability and extensibility

PyCytoData

Yang et al. (2023) in Genome Biology
An elegant data analysis tool for CyTOF
A mega package for CyTOF workflows, including CytofDR and cytomulate
Introducting PyCytoData Alliance and PyCytoData Alliance Plus

Cytomulate

Yang et al. (2023) in Genome Biology
An accurate and efficient simulation tool for CyTOF
My contributions: The maintenance guy who fixes stuff, mops up bits and pieces of code, and writes documentations.

Poetic

Find out how poetic YOU are via a statistical model!
I'm working on this (as time allows, that is.) I promise!
Stable releases are now out! Check it out!

Goals and motivations:

Stay healthy and fit!
Research principles: Adaptability, Interpretability, and Usability!
Contribute to open source!

Follow me:

Instagram: kevinwang_peace
Twitter: kevinwang_peace
Github: kevin931

poetic's People

Contributors

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poetic's Issues

Development Status Update

This is just a quick update: the project is not abandoned!! I will get to it at some point! If you're reading this, I said hi!!

Consider creating GUI using guietta?

I'd like to recommand guietta (to everyone!) to create simple GUI interactive apps, which is simple but very powerful!

InputLengthError message incorrect with custom model

Describe the bug
The error message of poetic.exceptions.InputLengthError as raised from the poetic.Predictor class is incorrect when the custom model used to initialized the class is of a different input length. The incorrect message reads: poetic.exceptions.InputLengthError: Input length out of bound: must be between 1 and 465.

To Reproduce

    import poetic

    model = poetic.util.Initializer.load_model(model_path=<PATH>, weights_path=<PATH>)
    pred = poetic.Predictor(model=model)
    pred.predict("")

Expected behavior
The error message should reflect the actual maximum input length of the model such as between 1 and 100 instead of 1 and 465.

Desktop (please complete the following information):

OS: Windows 10
Architecture: x86-64
Version: 20H2

poetic information

Version: 1.1.0
Build: Dev
Installation source: GitHub

Environment and dependencies

Python: 3.7.7
Environment: conda

Notes
This issue is a note to myself as well as a PA for everyone. I will get to this in a while, but if anyone would like to fix this in the mean time, it will be totally appreciated! PR should be made to the maintenance/v1.1.x branch which will then be merged into dev since v1.1.0 is the earliest version affected by this bug.

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