Kelly Sovacool, PhD's Projects
Modification-induced misincorporation tRNA sequencing
Differential expression analysis for miRNA sequence data
Repository to host tool-specific module files for the Nextflow DSL2 community!
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
wiki for the mothur software package
Presentation for my PhD defense seminar
My Bioinformatics PhD dissertation
A report of mikropml package download counts from cranlogs
Teaching git at Software Carpentry Workshop 2019-07-01
example repo for teaching git & github
My abstract, proposal, and presentation for the preliminary exam for the UMich Bioinformatics PhD program.
Quarto template for manuscripts & preprints
An example quarto website for curricula
A conda-smithy repository for r-mikropml.
Quarto template for U-M Rackham Dissertations
Practice using Rcpp
Teaching git at WISE Software Carpentry Workshop 2020-01-07
a sandbox for testing & exploration
Replication study of He et al. (2015) in Microbiome by Pat Schloss & Sarah Westcott
The website for the Schloss Lab at the University of Michigan
A minimal working example of using Snakemake log files with R scripts
A minimal working example of using Snakemake on an HPC running PBS-torque or SLURM.
Kate Sovacool's personal website
Sovacool's Tools: miscellanea with no other obvious home
A reference for concepts & equations in statistics.
reprex for mkdocs bug in bold styling
LaTeX template for University of Michigan Thesis
Practice from Building Tidy Tools workshop at rstudio::conf(2020)