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covid19canada's Introduction

Epidemiological Data from the COVID-19 Outbreak in Canada

We are collecting publicly available information on confirmed and presumptive postive cases during the ongoing COVID-19 outbreak in Canada. Data are entered in a spreadsheet with each line representing a unique case, including age, sex, health region location, and history of travel where available. Sources are included as a reference for each entry. All data are exclusively collected from publicly available sources including government reports and news media.

Acknowledgements

We want to thank all individuals and organizations across Canada who have been willing and able to report data in as open and timely a manner as possible.

Please see below for a recommended citation of this dataset. A number of individuals have contributed to the specific data added here and their names and details are listed below, as well as in the contributors tab of the spreadsheet.

Citation

Berry I, Soucy J-PR, Tuite A, Fisman D. Open access epidemiologic data and an interactive dashboard to monitor the COVID-19 outbreak in Canada. CMAJ. 2020 Apr 14;192(15):E420. doi: https://doi.org/10.1503/cmaj.75262

Dataset

The line list of cases is posted and updated at: https://docs.google.com/spreadsheets/d/1D6okqtBS3S2NRC7GFVHzaZ67DuTw7LX49-fqSLwJyeo/edit?usp=sharing (direct download link).

Alternatively, the data may be downloaded in a machine-readable format directly from this repository.

  • cases.csv: Individual-level cases
  • codebook.csv: Explanations for each variable in the dataset
  • mortality.csv: Individual-level mortality
  • recovered_cumulative.csv: Province-level cumulative recovered time series
  • testing_cumulative.csv: Province-level cumulative testing time series
  • update_time.txt: Date and time of update
  • timeseries_hr/cases_timeseries_hr.csv: Health region-level daily and cumulative case time series
  • timeseries_hr/mortality_timeseries_hr.csv: Health region-level daily and cumulative death time series
  • timeseries_prov/cases_timeseries_prov.csv: Province-level daily and cumulative case time series
  • timeseries_prov/mortality_timeseries_prov.csv: Province-level daily and cumulative death time series

We aim to continue making updates daily.

Dashboard

We have also created an interactive dashboard for up-to-date visual analytics and epidemiological analyses.

This is available for public use at: https://art-bd.shinyapps.io/covid19canada/

Specific Contributors

Name Organization Email Twitter
Isha Berry University of Toronto [email protected] @ishaberry2
Jean-Paul R. Soucy University of Toronto [email protected] @JPSoucy
Kamal Acharya University of Guelph [email protected] @Kamalraj_ach
Gabrielle Brankston University of Guelph [email protected] @GBrankston
Vinyas Harish University of Toronto [email protected] @VinyasHarish
Kathy Kornas University of Toronto [email protected]
Thivya Naganathan University of Guelph [email protected]
Lindsay Obress University of Guelph [email protected]
Meghan O'Neill University of Toronto [email protected] @_MeghanONeill
Tanya Rossi University of Guelph [email protected] @DrTanyaRossi
Alison Simmons University of Toronto [email protected] @alisonesimmons
Shelby Sturrock University of Toronto [email protected] @shelbysturrock
Matthew Van Camp University of Guelph [email protected]
James E. Wright SickKids [email protected] @JWright159
Wendy Xie University of Guelph [email protected] @XiaotingXie

covid19canada's People

Contributors

jeanpaulrsoucy avatar ishaberry avatar

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