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bioinf_pract_lecture

Lecture materials for the course "Bioinformatisches Praktikum" at University of Greifswald

braker-tsebra-workshop

This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA

compleasm

A genome completeness evaluation tool based on miniprot

eviann_release

This is the standalone version of the EviAnn pipeline

galba-data

Repository that describes and contains data used for the manuscript on GALBA

genemark-etp

GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

genomeannotation_workshop

Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV

liftoff

An accurate GFF3/GTF lift over pipeline

metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

omark

phylokernel

Mathematica code for PhyloNetReductions

pyprog

An introductory Python course for people with programming experience

pythoncompact

Python compact course (preparatory for more advanced courses)

pyzero

reconstruct-parser

Parser for Reconstruct XML files of electron microscopy images with marked contours

statisticspython

Statistics with Python

statistikibilder

Bilder zu den JupyterNotebooks von Statistik I

teaching

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.