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License: MIT License
Docker Containger for BUSCO Annotation QC
License: MIT License
Hi,
Thanks for making this busco container. I have tried it with the C. elegans genome but got an error:
docker run -v "$PWD":/input kastman/busco-docker:3.0.0 --in /input/output/genome/celegans/ref/ensembl/release95/seq/Caenorhabditis_elegans.WBcel235.dna.toplevel.fa --lineage_path /input/nematoda_odb9 -m genome -o out_label
INFO ****************** Start a BUSCO 3.0.0 analysis, current time: 04/08/2019 13:14:39 ******************
INFO Init tools...
INFO Check dependencies...
ERROR The environment variable AUGUSTUS_CONFIG_PATH is not set
ERROR BUSCO analysis failed !
ERROR Check the logs, read the user guide, if you still need technical support, then please contact mailto:[email protected]
Do you know how to fix it? I've tried this on macOS X. I am new to Docker but I understand that changing my local AUGUSTUS_CONFIG_PATH is not going to solve this problem since busco is run within an isolated container.
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