kasaai / ctgan Goto Github PK
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License: Other
R interface to CTGAN
License: Other
The installation seemed successful but I don't seem to be able to load the library successfully? And thus can't use the functions?
Newly installed the ctgan package and ctgan using install_ctgan(). Now trying to run the example from the Github page (synthesizer <- ctgan()) and getting the error:
Error in py_get_attr_impl(x, name, silent) :
AttributeError: module 'ctgan' has no attribute 'CTGANSynthesizer'
Edit: FWIW it looks like v0.6.0 of ctgan changed the name of CTGANSynthesizer to just CTGAN (https://pypi.org/project/ctgan/)
Need to investigate whether we can do away with the patches, especially relating to printing epoch stats to console.
I went through the install process, then ran install_ctgan_deps()
and it all seemed to install with no issues. However when I then tried
library(ctgan)
synthesizer <- ctgan()
I would get the following error:
Error in py_get_attr_impl(x, name, silent) :
AttributeError: 'module' object has no attribute 'ctgan_model'
Here's my output from install_ctgan_deps()
> install_ctgan_deps()
Using virtual environment '~/.virtualenvs/r-reticulate' ...
Collecting torch
Downloading https://files.pythonhosted.org/packages/7e/94/0ed9f7899aa0f5e7ff753a3a2b6944c146eef3f4cd51c59ab07c4575992b/torch-1.3.1-cp37-none-macosx_10_7_x86_64.whl (71.1MB)
Collecting torchvision
Downloading https://files.pythonhosted.org/packages/fa/71/0e76ba50c8c9aeb8349d827d02278c1b5eb4da9cdc17ca26b5bd47ec034a/torchvision-0.4.2-cp37-cp37m-macosx_10_7_x86_64.whl (641kB)
Collecting sklearn
Downloading https://files.pythonhosted.org/packages/1e/7a/dbb3be0ce9bd5c8b7e3d87328e79063f8b263b2b1bfa4774cb1147bfcd3f/sklearn-0.0.tar.gz
Collecting numpy
Downloading https://files.pythonhosted.org/packages/60/9a/a6b3168f2194fb468dcc4cf54c8344d1f514935006c3347ede198e968cb0/numpy-1.17.4-cp37-cp37m-macosx_10_9_x86_64.whl (15.1MB)
Collecting pandas
Downloading https://files.pythonhosted.org/packages/16/b5/bab3477466a4d9e705d40829ac65683155e7977acbc07f05b06fabded1be/pandas-0.25.3-cp37-cp37m-macosx_10_9_x86_64.whl (10.2MB)
Collecting pillow>=4.1.1 (from torchvision)
Downloading https://files.pythonhosted.org/packages/85/28/2c72ba965b52884a0bd71e419761fc162763dc2e5d9bec2f3b1949f7272a/Pillow-6.2.1-cp37-cp37m-macosx_10_6_intel.whl (3.9MB)
Collecting six (from torchvision)
Downloading https://files.pythonhosted.org/packages/65/26/32b8464df2a97e6dd1b656ed26b2c194606c16fe163c695a992b36c11cdf/six-1.13.0-py2.py3-none-any.whl
Collecting scikit-learn (from sklearn)
Downloading https://files.pythonhosted.org/packages/b1/db/102a43a72afd2b0938ca039af6047e2a2bf5e5d5eb1bbe38ce616e2d750d/scikit_learn-0.22-cp37-cp37m-macosx_10_6_intel.whl (10.9MB)
Collecting pytz>=2017.2 (from pandas)
Downloading https://files.pythonhosted.org/packages/e7/f9/f0b53f88060247251bf481fa6ea62cd0d25bf1b11a87888e53ce5b7c8ad2/pytz-2019.3-py2.py3-none-any.whl (509kB)
Collecting python-dateutil>=2.6.1 (from pandas)
Downloading https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl (227kB)
Collecting joblib>=0.11 (from scikit-learn->sklearn)
Downloading https://files.pythonhosted.org/packages/28/5c/cf6a2b65a321c4a209efcdf64c2689efae2cb62661f8f6f4bb28547cf1bf/joblib-0.14.1-py2.py3-none-any.whl (294kB)
Collecting scipy>=0.17.0 (from scikit-learn->sklearn)
Downloading https://files.pythonhosted.org/packages/43/df/3f85a3a762e5dd8d593614288c1f86a5dfbb8b20071192e850d1a9934e7d/scipy-1.3.3-cp37-cp37m-macosx_10_6_intel.whl (27.7MB)
Building wheels for collected packages: sklearn
Building wheel for sklearn (setup.py): started
Building wheel for sklearn (setup.py): finished with status 'done'
Stored in directory: /Users/jal/Library/Caches/pip/wheels/76/03/bb/589d421d27431bcd2c6da284d5f2286c8e3b2ea3cf1594c074
Successfully built sklearn
Installing collected packages: numpy, torch, pillow, six, torchvision, joblib, scipy, scikit-learn, sklearn, pytz, python-dateutil, pandas
Successfully installed joblib-0.14.1 numpy-1.17.4 pandas-0.25.3 pillow-6.2.1 python-dateutil-2.8.1 pytz-2019.3 scikit-learn-0.22 scipy-1.3.3 six-1.13.0 sklearn-0.0 torch-1.3.1 torchvision-0.4.2
You are using pip version 19.0.3, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Installation complete.
Restarting R session...
and here's my sessionInfo()
:
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS 10.15.1
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ctgan_0.1.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 lattice_0.20-38 zeallot_0.1.0 crayon_1.3.4 dplyr_0.8.99.9000 assertthat_0.2.1 grid_3.6.0
[8] R6_2.4.1 jsonlite_1.6 magrittr_1.5 pillar_1.4.2.9001 rlang_0.4.2 rstudioapi_0.10 Matrix_1.2-17
[15] reticulate_1.13 generics_0.0.2 vctrs_0.2.0.9007 lobstr_1.1.1 tools_3.6.0 glue_1.3.1 purrr_0.3.3
[22] compiler_3.6.0 pkgconfig_2.0.3 tidyselect_0.2.5 tibble_2.99.99.9010
>
Same exact error as above with the 'init()' got an unexpected keyword argument 'gen_dim'
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