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An Message Passing Interface (MPI) implementation for Java,
License: Other
This project forked from mpjexpress-project/mpjexpress
An Message Passing Interface (MPI) implementation for Java,
License: Other
QuickStart Guide: Running MPJ Express on UNIX/Linux/Mac platform Last Updated: Sat April 18 11:51:20 PKT 2015 Version 0.44 Introduction ============ MPJ Express is a reference implementation of the mpiJava 1.2 API, which is an MPI-like API for Java defined by the Java Grande forum. MPJ Express can be configured in two ways: 1. Multicore Configuration: This configuration is used by developers who want to execute their parallel Java applications on multicore or shared memory machines (laptops and desktops). 2. Cluster Configuration: This configuration is used by developers who want to execute their parallel Java applications on distributed memory platforms including clusters and network of computers. There are four options in the cluster configuration. i) niodev - uses Java NIO Sockets ii) mxdev - uses Myrinet eXpress (MX) library for Myrinet networks iii) hybdev - for clusters of multicore processors iv) native - uses a native MPI library (like MPICH, MVAPICH, Open MPI) This document contains steps to help you execute your first MPJ Express program on UNIX/Linux/Mac platforms. Windows users should consult README-win.txt. Pre-requisites ============== 1. Java 1.6 (stable) or higher (Mandatory) 2. Apache ant 1.6.2 or higher (Optional) 3. Perl (Optional) 4. Native MPI library (Optional): Native MPI library such as MPICH, MVAPICH or Open MPI is required for running MPJ Express in cluster configuration with native device. 5. CMake (Optional): CMake is used for generating Makefile to compile native JNI C code Running MPJ Express Programs in the Multicore Configuration =========================================================== 1. Download MPJ Express and unpack it. 2. Set MPJ_HOME and PATH environmental variables: export MPJ_HOME=/path/to/mpj/ export PATH=$MPJ_HOME/bin:$PATH (These above two lines can be added to ~/.bashrc) 3. Write your MPJ Express program (HelloWorld.java) and save it. 4. Compile: javac -cp .:$MPJ_HOME/lib/mpj.jar HelloWorld.java 5. Execute: mpjrun.sh -np 4 HelloWorld Running MPJ Express Programs in the Cluster Configuration ========================================================= 1. Assuming you have completed step 1 to 4 of the Multicore Configuration. 2. Write a machines file (name it "machines") stating host names or IP addresses of all machines involved in the parallel execution. 3. Execution: -- For niodev, hybdev and mxdev i) Start daemons: mpjboot machines ii) Execute: mpjrun.sh -np 4 -dev niodev HelloWorld -- For -dev <device> here device can be niodev, hybdev or mxdev iii) Stop daemons: mpjhalt machines -- For native deive i) Compile JNI wrapper library: a) Make sure cmake (2.6 or above) is installed on the system b) Make sure a native MPI library is installed on the system and working. To install MPICH for example go to http://www.mpich.org/downloads/ and download the native MPI library, install and make sure that its working. c) Create build directory: cd $MPJ_HOME/src/natmpjdev/lib; mkdir build d) Generate Makefile using cmake: cmake .. e) make: make f) install: make install ii) Execute: mpjrun.sh -np 4 -dev native HelloWorld For detials read the linuxguide.pdf that can be found in $MPJ_HOME/doc Running MPJ Express Programs on HADOOP Clusters ========================================================= To run your MPJ programs on HADOOP Clusters, please refer to "yarnguide.pdf" in $MPJ_HOME/doc folder Known Issues ============ 1. One of the known issues of MPJ Express in cluster configuration is incorrect working directroy. This issue is reported on cluster build using Rocks clusters. MPJRun module of MPJ Express reads the current directory i.e. user directory using System.getProperty("user.dir") It should retrun same path as Unix 'pwd' command. But it is not giving same result. As a manual work around for this issue is to use -wdir switch in mpjrun command and giving path to the current directory where HelloWorld is placed i.e. mpjrun.sh -np 4 -dev niodev -wdir /export/home/aamir/projects/mpj-user/ HelloWorld Additional Documentation ======================== For more details, see $MPJ_HOME/doc/linuxguide.pdf Contact and Support =================== In case you run into issues please consult $MPJ_HOME/doc/linuxguide.pdf. If your query/problem is still not resolved, contact us by emailing: 1. MPJ Express mailing list: https://lists.sourceforge.net/lists/listinfo/mpjexpress-users 2. Aamir Shafi ([email protected]) 3. Mohsan Jameel ([email protected]) 4. Bryan Carpenter ([email protected]) 5. Muhammad Ansar Javed ([email protected]) 6. Bibrak Qamar ([email protected]) 7. Aleem Akhtar ([email protected]) 8. Hamza Zafar ([email protected])
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