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expression.txt
is expression profiles from proteins or mRNAs -
trait.txt
is trait matrix,but is also a optional file. If there is no trait data, you can use group data instead. First column is sample id, second column is sample group id.S-control-1 S-control S-control-2 S-control S-control-3 S-control S-NHPS-L-1 S-NHPS-L S-NHPS-L-2 S-NHPS-L S-NHPS-L-3 S-NHPS-L S-NHPS-H-1 S-NHPS-H S-NHPS-H-2 S-NHPS-H S-NHPS-H-3 S-NHPS-H F-control-1 F-control F-control-2 F-control F-control-3 F-control F-NHPS-L-1 F-NHPS-L F-NHPS-L-2 F-NHPS-L F-NHPS-L-3 F-NHPS-L F-NHPS-H-1 F-NHPS-H F-NHPS-H-2 F-NHPS-H F-NHPS-H-3 F-NHPS-H
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All result files and photos from wgcna analysis in Demo
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The default values of WGCNA networkType/TOMtype is unsigned
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If trait_form is equal to 1, you shoud have trait matrix, otherwise group data instead
wgcna's Introduction
wgcna's People
wgcna's Issues
wgcna_proteome
Learn wgcna
limma
Hi! I'm sorry to bother you. I have a question ,my data have batch effect so that my wgcna result is bad.I saw a tutorial you wright to remove batch effect by limma,but how can i output the matrix after remove batch effect? Thank you very mach!
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