The blotbench from kaiaragaki

blotbench's Introduction

Your buddy Kai (he/him)

🤹🏻 Skills and Education

6th year Pharmacology PhD candidate @ Johns Hopkins
BS Biochemistry + Molecular & Cellular Biology @ University of Arizona
7yrs R/Tidyverse/Bioconductor/Shiny/RMarkdown/targets/pkg dev/etc...
8yrs pipettes/cell culture/spheroids/westerns/PCR/etc...
Still learning all the time

❤️ Interests

Hyper-reproducible science
Bioinformatics
Making packages to bridge the bench-to-keyboard chasm
Moving expensive little liquids around
Cats

blotbench's People

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blotbench's Issues

add `cbind` and `rbind` methods

changing gpar (particularly of text) from `present_wb`

should [ transiently (or permanently?) apply transforms?

should transforms be diffs?

Instead of showing what the new values will look like, why not show them as additions, subtractions, etc of the current values? This way it is much easier to read what is being done

apply_transform should return a wb object with fresh transforms

enhance editor

Add grid lines so users can better estimate the inputs the should use
Don't crop the images, just overlay 'mattes' or something so you can still kinda see what's on the borders

Create a thin 'image writing' wrapper function

This would allow for the specification of a single 'width' or 'height' argument. This is handy since the aspect ratio of the subject is fixed, and often (unless you're very lucky!) you'll just end up with useless white bars on the dimension that has aspect.

tests

#10
#11
- works if col_annot AND row_annot is NULL (+/- transforms)
- fails if imgs not supplied
- fails if length(imgs(x)) != nrow(row_annot(x)) != nrow(transforms(x)) (after their generation if NULL)
#12