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tkelman tumdog visr ghaspias aviatesk nhdaly simondanisch philipvinc standardgalactic stjordanisdocseeker.jl's Issues
Better module overview
Defining packages, defined names etc.
Search only matches the word before a fullstop (e.g. Module.function_name finds Module but not function_name)
When writing a docstring, If one writes something like
See also: Kernel.ando3 (i.e. (Kernel.ando3 with backticks around Kernel.ando)
where Kernel is a module, then currently the documentation browser will not find the function ando3 defined in the Kernel module, but instead will match the first part of the word and try to bring up documentation for Kernel if it exists.
Bump StringDistances?
Is it possible to use the latest version of StringDistances (currently v0.10.0)?
Among others, it would allow Atom to coexist in same environments using latest StringDistances
Use DocStringExtensions
database not created
Hello,
I am trying to use this package in julia v1.0. When I run
using DocSeeker
DocSeeker.generatedocsdb()
nothing happens.
Looking in the path reported by
DocSeeker.dbpath
there is no database created.
If I run
DocSeeker._createdocsdb("DocSeeker.jl")
I get this error:
ERROR: UndefVarError: serialize not defined
Stacktrace:
[1] (::getfield(DocSeeker, Symbol("##28#30")))(::IOStream) at C:\Users\Miguel.julia\packages\DocSeeker\PZWMc\src\static.jl:54
[2] #open#294(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(DocSeeker, Symbol("##28#30")), ::String, ::Vararg{String,N} where N) at .\iostream.jl:369
[3] open at .\iostream.jl:367 [inlined]
[4] _createdocsdb(::String) at C:\Users\Miguel.julia\packages\DocSeeker\PZWMc\src\static.jl:53
[5] top-level scope at none:0
However, if I load package Compat, the same command gives the error
ERROR: EOFError: read end of file
Stacktrace:
[1] read at .\iostream.jl:395 [inlined]
[2] deserialize at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Serialization\src\Serialization.jl:703 [inlined]
[3] deserialize(::IOStream) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Serialization\src\Serialization.jl:700
[4] #27 at C:\Users\Miguel.julia\packages\DocSeeker\PZWMc\src\static.jl:48 [inlined]
[5] #open#294(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(DocSeeker, Symbol("##27#29")), ::String, ::Vararg{String,N} where N) at .\iostream.jl:369
[6] open at .\iostream.jl:367 [inlined]
[7] _createdocsdb(::String) at C:\Users\Miguel.julia\packages\DocSeeker\PZWMc\src\static.jl:46
[8] top-level scope at none:0
Error when searching in Documentation tab of Juno
In Documentation tab of Juno, I typed @printf and received this error in REPL tab:
Julia-1.2.0> ┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead.│ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:46└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead. │ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:47│ exception =│ UndefRefError: access to undefined reference│ [2] ht_keyindex2!(::Dict{Any,Int64}, ::Tuple{Ptr{Nothing},Symbol}) at .\dict.jl:326│ [3] get!(::getfield(Base, Symbol("##241#242")){Int64}, ::Dict{Any,Int64}, ::Tuple{Ptr{Nothing},Symbol}) at .\dict.jl:447│ [4] get! at .\dict.jl:420 [inlined]│ [5] #handle_message#2(::Int64, ::Base.Iterators.Pairs{Symbol,Base.StackTraces.StackFrame,Tuple{Symbol},NamedTuple{(:caller,),Tuple{Base.StackTraces.StackFrame}}}, ::typeof(Base.CoreLogging.handle_message), ::Logging.ConsoleLogger, ::Base.CoreLogging.LogLevel, ::String, ::Module, ::Symbol, ::Tuple{Ptr{Nothing},Symbol}, ::String, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Logging\src\ConsoleLogger.jl:101│ [6] (::getfield(Base.CoreLogging, Symbol("#kw##handle_message")))(::NamedTuple{(:caller, :maxlog),Tuple{Base.StackTraces.StackFrame,Int64}}, ::typeof(Base.CoreLogging.handle_message), ::Logging.ConsoleLogger, ::Base.CoreLogging.LogLevel, ::String, ::Module, ::Symbol, ::Tuple{Ptr{Nothing},Symbol}, ::String, ::Int64) at .\none:0│ [7] macro expansion at .\logging.jl:320 [inlined]│ [8] depwarn(::String, ::Symbol) at .\deprecated.jl:80│ [9] compare(::StringDistances.Winkler{StringDistances.Jaro,Float64,Float64}, ::String, ::String) at .\deprecated.jl:66
│ [10] score(::String, ::DocSeeker.DocObj, ::Bool) at C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46
│ [11] macro expansion at C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\introspective.jl:20 [inlined]
│ [12] (::getfield(DocSeeker, Symbol("##20#threadsfor_fun#7")){String,Bool,Array{DocSeeker.DocObj,1},Array{Float64,1},Base.OneTo{Int64}})(::Bool) at .\threadingconstructs.jl:64
│ [13] (::getfield(DocSeeker, Symbol("##20#threadsfor_fun#7")){String,Bool,Array{DocSeeker.DocObj,1},Array{Float64,1},Base.OneTo{Int64}})() at .\threadingconstructs.jl:31└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46┌ Error: Exception while generating log record in module DocSeeker at C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46 │ exception =
│ UndefRefError: access to undefined reference
│ Stacktrace:
│ [1] getindex at .\array.jl:728 [inlined]
│ [2] ht_keyindex2!(::Dict{Any,Int64}, ::Tuple{Ptr{Nothing},Symbol}) at .\dict.jl:326
│ [3] get!(::getfield(Base, Symbol("##241#242")){Int64}, ::Dict{Any,Int64}, ::Tuple{Ptr{Nothing},Symbol}) at .\dict.jl:447
│ [4] get! at .\dict.jl:420 [inlined]
│ [5] #handle_message#2(::Int64, ::Base.Iterators.Pairs{Symbol,Base.StackTraces.StackFrame,Tuple{Symbol},NamedTuple{(:caller,),Tuple{Base.StackTraces.StackFrame}}}, ::typeof(Base.CoreLogging.handle_message), ::Logging.ConsoleLogger, ::Base.CoreLogging.LogLevel, ::String, ::Module, ::Symbol, ::Tuple{Ptr{Nothing},Symbol}, ::String, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Logging\src\ConsoleLogger.jl:101│ [6] (::getfield(Base.CoreLogging, Symbol("#kw##handle_message")))(::NamedTuple{(:caller, :maxlog),Tuple{Base.StackTraces.StackFrame,Int64}}, ::typeof(Base.CoreLogging.handle_message), ::Logging.ConsoleLogger, ::Base.CoreLogging.LogLevel, ::String, ::Module, ::Symbol, ::Tuple{Ptr{Nothing},Symbol}, ::String, ::Int64) at .\none:0│ [7] macro expansion at .\logging.jl:320 [inlined]│ [8] depwarn(::String, ::Symbol) at .\deprecated.jl:80│ [9] compare(::StringDistances.Winkler{StringDistances.Jaro,Float64,Float64}, ::String, ::String) at .\deprecated.jl:66
│ [10] score(::String, ::DocSeeker.DocObj, ::Bool) at C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46
│ [11] macro expansion at C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\introspective.jl:20 [inlined]
│ [12] (::getfield(DocSeeker, Symbol("##20#threadsfor_fun#7")){String,Bool,Array{DocSeeker.DocObj,1},Array{Float64,1},Base.OneTo{Int64}})(::Bool) at .\threadingconstructs.jl:64
│ [13] (::getfield(DocSeeker, Symbol("##20#threadsfor_fun#7")){String,Bool,Array{DocSeeker.DocObj,1},Array{Float64,1},Base.OneTo{Int64}})() at .\threadingconstructs.jl:31└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead. │ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:52
└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:52
I cannot reproduce the exact error, but restarting Juno and typing println into the Documention tab reproduces this:
Julia-1.2.0> ┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead.
│ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:52
└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:52
┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead.
│ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:46
└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:46
┌ Warning: `compare(dist::PreMetric, s1::AbstractString, s2::AbstractString)` is deprecated, use `compare(s1, s2, dist)` instead.
│ caller = score(::String, ::DocSeeker.DocObj, ::Bool) at DocSeeker.jl:47
└ @ DocSeeker C:\Users\Greg\.julia\packages\DocSeeker\PZWMc\src\DocSeeker.jl:47
Debug info:
# Atom:
Version: 1.40.1
Dev Mode: false
Official Release: true
{
"http_parser": "2.8.0",
"node": "10.2.0",
"v8": "6.6.346.32",
"uv": "1.20.3",
"zlib": "1.2.11",
"ares": "1.14.0",
"modules": "64",
"nghttp2": "1.29.0",
"napi": "3",
"openssl": "1.1.0h",
"electron": "3.1.10",
"chrome": "66.0.3359.181"
}
# julia-client:
Version: 0.9.4
Config:
{
"firstBoot": false,
"juliaPath": "C:\\Program Files\\Julia-1.2.0\\bin\\julia.exe",
"uiOptions": {
"enableMenu": true,
"enableToolBar": true,
"layouts": {
"openDefaultPanesOnStartUp": false
}
}
}
# ink:
Version: 0.10.12
Config:
undefined
# uber-juno:not installed
# language-julia:
Version: 0.19.1
Config:
undefined
# language-weave:not installed
# indent-detective:not installed
Julia Version 1.2.0
Commit c6da87ff4b (2019-08-20 00:03 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: AMD A8-7600 Radeon R7, 10 Compute Cores 4C+6G
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-6.0.1 (ORCJIT, bdver3)
Environment:
JULIA_EDITOR = "C:\Program Files\Sublime Text 3\sublime_text.exe"
JULIA_NUM_THREADS = 4
JULIA_SHELL = cmd
JULIA_SSH_CMD = "C:\Program Files (x86)\Bitvise SSH Client\sexec.exe"
Status `C:\Users\Greg\.julia\environments\v1.2\Project.toml`
[dce04be8] ArgCheck v1.0.1
[c52e3926] Atom v0.9.1
[fbb218c0] BSON v0.2.3
[6e4b80f9] BenchmarkTools v0.4.2
[336ed68f] CSV v0.5.11
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v0.7.0
[adafc99b] CpuId v0.2.2
[a93c6f00] DataFrames v0.19.3
[864edb3b] DataStructures v0.17.0
[31a5f54b] Debugger v0.5.0
[55939f99] DecFP v0.4.8
[aaf54ef3] DistributedArrays v0.6.3
[31c24e10] Distributions v0.21.1
[497a8b3b] DoubleFloats v0.9.7
[5f923234] Fatou v1.1.0
[5789e2e9] FileIO v1.0.7
[59287772] Formatting v0.3.5
[da1fdf0e] FreqTables v0.3.1
[c91e804a] Gadfly v1.0.1
[6218d12a] ImageMagick v0.7.5
[86fae568] ImageView v0.9.0
[916415d5] Images v0.18.0
[6deec6e2] IndexedTables v0.12.2
[033835bb] JLD2 v0.1.2
[a93385a2] JuliaDB v0.12.0
[aa1ae85d] JuliaInterpreter v0.6.1
[e5e0dc1b] Juno v0.7.2
[5078a376] LazyArrays v0.10.0
[1914dd2f] MacroTools v0.5.1
[2774e3e8] NLsolve v4.1.0
[6fe1bfb0] OffsetArrays v0.11.1
[429524aa] Optim v0.19.2
[69de0a69] Parsers v0.3.6
[08abe8d2] PrettyTables v0.5.1
[27ebfcd6] Primes v0.4.0
[c46f51b8] ProfileView v0.4.1
[be4d8f0f] Quadmath v0.5.0
[97cc5700] RNGTest v1.4.0
[74087812] Random123 v1.2.0
[e6cf234a] RandomNumbers v1.3.0
[ee283ea6] Rebugger v0.3.2
[a39b5e78] ReusePatterns v0.1.2
[295af30f] Revise v2.1.8
[90137ffa] StaticArrays v0.11.0
[2913bbd2] StatsBase v0.32.0
[70df011a] TableReader v0.4.0
[40c74d1a] TableView v0.4.0
[bd369af6] Tables v0.2.11
[5e47fb64] TestImages v0.5.1
[37b6cedf] Traceur v0.3.0
[28d57a85] Transducers v0.4.0
[b8865327] UnicodePlots v1.1.0
[fdbf4ff8] XLSX v0.5.4
Automate cache re-generation
Also use Juno's progress bar and start a new process for each package.
DocSeeker broken on julia master
It looks like JuliaLang/Pkg.jl#1086 removed Pkg.installed(), so this package (and thus Atom.jl) is now broken on julia master:
Press Enter to start Julia.
Starting Julia...
[ Info: Precompiling Atom [c52e3926-4ff0-5f6e-af25-54175e0327b1]
ERROR: LoadError: LoadError: UndefVarError: installed not defined
Stacktrace:
[1] include(::Module, ::String) at ./Base.jl:377
[2] include(::String) at /Users/nathan.daly/.julia/packages/DocSeeker/551Y8/src/DocSeeker.jl:3
[3] top-level scope at /Users/nathan.daly/.julia/packages/DocSeeker/551Y8/src/DocSeeker.jl:83
[4] include(::Module, ::String) at ./Base.jl:377
[5] top-level scope at none:2
[6] eval at ./boot.jl:330 [inlined]
[7] eval(::Expr) at ./client.jl:457
[8] top-level scope at ./none:3
in expression starting at /Users/nathan.daly/.julia/packages/DocSeeker/551Y8/src/static.jl:1
in expression starting at /Users/nathan.daly/.julia/packages/DocSeeker/551Y8/src/DocSeeker.jl:83
ERROR: LoadError: LoadError: Failed to precompile DocSeeker [33d173f1-3be9-53c5-a697-8225b67db89c] to /Users/nathan.daly/.julia/compiled/v1.4/DocSeeker/zL2Vm_zz0KN.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1247
[3] _require(::Base.PkgId) at ./loading.jl:1009
[4] require(::Base.PkgId) at ./loading.jl:907
[5] require(::Module, ::Symbol) at ./loading.jl:902
[6] include(::Module, ::String) at ./Base.jl:377
[7] include(::String) at /Users/nathan.daly/.julia/packages/Atom/BVajq/src/Atom.jl:3
[8] top-level scope at /Users/nathan.daly/.julia/packages/Atom/BVajq/src/Atom.jl:47
[9] include(::Module, ::String) at ./Base.jl:377
[10] top-level scope at none:2
[11] eval at ./boot.jl:330 [inlined]
[12] eval(::Expr) at ./client.jl:457
[13] top-level scope at ./none:3
in expression starting at /Users/nathan.daly/.julia/packages/Atom/BVajq/src/docs.jl:1
in expression starting at /Users/nathan.daly/.julia/packages/Atom/BVajq/src/Atom.jl:47
ERROR: LoadError: Failed to precompile Atom [c52e3926-4ff0-5f6e-af25-54175e0327b1] to /Users/nathan.daly/.julia/compiled/v1.4/Atom/w9XOh_zz0KN.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1247
[3] _require(::Base.PkgId) at ./loading.jl:1009
[4] require(::Base.PkgId) at ./loading.jl:907
[5] require(::Module, ::Symbol) at ./loading.jl:902
[6] top-level scope at /Users/nathan.daly/dotfiles/nhdaly/atom/packages/julia-client/script/boot_repl.jl:31
[7] include(::Module, ::String) at ./Base.jl:377
[8] exec_options(::Base.JLOptions) at ./client.jl:296
[9] _start() at ./client.jl:492
in expression starting at /Users/nathan.daly/dotfiles/nhdaly/atom/packages/julia-client/script/boot_repl.jl:1
_
_ _ _(_)_ | Documentation: https://docs.julialang.org
(_) | (_) (_) |
_ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 1.4.0-DEV.249 (2019-10-03)
_/ |\__'_|_|_|\__'_| | Commit 1739ca0aea (0 days old master)
|__/ |
julia> VERSION
v"1.4.0-DEV.249"It looks like dependencies() is now what you want?:
https://github.com/JuliaLang/Pkg.jl/pull/1086/files#diff-cac25e1e95e0a8d859cacad2a2e69677R161
I'm not sure though.
Correctly follow links to doc sections
TagBot trigger issue
This issue is used to trigger TagBot; feel free to unsubscribe.
If you haven't already, you should update your TagBot.yml to include issue comment triggers.
Please see this post on Discourse for instructions and more details.
If you'd like for me to do this for you, comment TagBot fix on this issue.
I'll open a PR within a few hours, please be patient!
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