Difficulty: Medium

Time: 15 hours

Requirements

1. explain what is Texturespec object and how it is used in MedEye3D
2. Describe the role of each field and show print screens of how he change affect display
3. explain how different configurations are suitable for different kinds of medical imaging modalities (for example that CT is displayed in black and white and PET data in color scale; labels in discrete colors)

Expected Outcomes

Creating tutorial that will meet all requirements; consider doing also a video

Additional Notes

For inspiration and examples look into sources below
https://github.com/JuliaHealth/MedPipe3DTutorial
https://github.com/JuliaHealth/MedEye3d.jl

Tutorial should involve loading data from some public repository like from medical decathlon [1]

1)http://medicaldecathlon.com/

Difficulty: Medium

Time: 10 hours

Requirements

1. explain how window size is configured
2. explain how to add text to the view
3. Show how to display text from MedEval

Expected Outcomes

Creating tutorial that show how to configure the window size, and how to display text including metrics from MedEval. Tutorial should involve loading data from some public repository like spleen dataset from medical decathlon [1], consider adding also video tutorial.

Additional Notes

For inspiration and examples look into source below
https://github.com/JuliaHealth/MedPipe3DTutorial

1)http://medicaldecathlon.com/

Add the section with all keyboard shortcuts and print screens showing their effects

Enable loading the image using MedImage.jl .

This issue is used to trigger TagBot; feel free to unsubscribe.

If you haven't already, you should update your TagBot.yml to include issue comment triggers.
Please see this post on Discourse for instructions and more details.

If you'd like for me to do this for you, comment TagBot fix on this issue.
I'll open a PR within a few hours, please be patient!

Success criteria

Given the most common PET and MRI modalities (random FDG PET/CT, and T2, T1, FLAIR, ADC, DWI on MRI) - the user will see the image similar to what is automatically displayed in 3DSlicer

Enable persistence of texture specifications objects by saving them in medimage objects and loading from them.

Any measurable decrease in the start time of the viewer

The user will be able to display images just by supplying MedImage objects from the MedImage.jl library to a single display function

Success criteria
The user can load 2 different images, and they would display concurrently one next to the other. During scrolling the same area of the body should be displayed (for well-registered sample images) based on the supplied metadata. While moving the mouse cursor on one image the position of the cursor in the same physical spot on the other image should be displayed (physical location calculated from spatial metadata).

Success when
Given an integer mask where a unique integer value will encode information about a single supervoxel and an underlying 3d medical image user will have the option to overlay the original image with the borders of the superpixels where adjacent borders will have different colors, or show those borders on the background of the image convolved with edge filter, for example, Sobel filter