License: GNU General Public License v3.0
Reorders and orientates contigs from a fasta file using a pan genome graph.
Run the following to get usage:
madansi -h
An example:
madansi 'madansi/tests/data/pan_genome_reference.fa' 'madansi/tests/data/assembly_4_sequences.fa' 'madansi/tests/data/graph_5_nodes.dot'
--output_fasta_file '/tmp/ordered_contigs.fa'
--output_directory '/tmp/all_files'
Run python setup.py test
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